Cell Cycle-Regulated Transcription: Effectively Using a Genomics Toolbox

  • Sara L. Bristow
  • Adam R. Leman
  • Steven B. Haase
Part of the Methods in Molecular Biology book series (MIMB, volume 1170)

Abstract

The cell cycle comprises a series of temporally ordered events that occur sequentially, including DNA replication, centrosome duplication, mitosis, and cytokinesis. What are the regulatory mechanisms that ensure proper timing and coordination of events during the cell cycle? Biochemical and genetic screens have identified a number of cell-cycle regulators, and it was recognized early on that many of the genes encoding cell-cycle regulators, including cyclins, were transcribed only in distinct phases of the cell cycle. Thus, “just in time” expression is likely an important part of the mechanism that maintains the proper temporal order of cell cycle events. New high-throughput technologies for measuring transcript levels have revealed that a large percentage of the Saccharomyces cerevisiae transcriptome (~20 %) is cell cycle regulated. Similarly, a substantial fraction of the mammalian transcriptome is cell cycle-regulated. Over the past 25 years, many studies have been undertaken to determine how gene expression is regulated during the cell cycle. In this review, we discuss contemporary models for the control of cell cycle-regulated transcription, and how this transcription program is coordinated with other cell cycle events in S. cerevisiae. In addition, we address the genomic approaches and analytical methods that enabled contemporary models of cell cycle transcription. Finally, we address current and future technologies that will aid in further understanding the role of periodic transcription during cell cycle progression.

Key words

Saccharomyces cerevisiae Cell cycle Periodic transcription Transcription factor network Cyclins Cyclin-dependent kinases (CDKs) 

Notes

Acknowledgement

Members of the Haase Lab are thanked for their critical reading and comments.

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Copyright information

© Springer Science+Business Media New York 2014

Authors and Affiliations

  • Sara L. Bristow
    • 1
    • 2
  • Adam R. Leman
    • 1
    • 2
  • Steven B. Haase
    • 1
    • 2
  1. 1.Department of BiologyDuke UniversityDurhamUSA
  2. 2.Duke Center for Systems BiologyDuke UniversityDurhamUSA

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