Skip to main content

Animal Probes and ZOO-FISH

  • Protocol
  • First Online:
Fluorescence In Situ Hybridization (FISH)

Part of the book series: Springer Protocols Handbooks ((SPH))

Abstract

The invention of cross-species chromosome painting (Zoo-FISH) represents the most significant technical breakthrough in animal cytogenetics after the introduction of chromosomal banding techniques in late 1960 and the early 1970s. This made it possible to compare the karyotypes of virtually any two vertebrate species that diverged up to 100 million years ago. With the availability of paint probes for more and more vertebrate species, Zoo-FISH has made a far-reaching impact on animal comparative cytogenetics, leading to the birth of the new cytogenetics—cytogenomics. Here we present two detailed protocols for cross-species chromosome painting.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 119.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 159.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 179.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Scherthan H, Cremer T, Arnason U et al (1994) Comparative chromosome painting discloses homologous segments in distantly related mammals. Nat Genet 6:342–347

    Article  CAS  PubMed  Google Scholar 

  2. Pinkel D, Landegent J, Collins C et al (1988) Fluorescence in situ hybridization with human chromosome-specific libraries – detection of trisomy-21 and translocations of chromosome-4. Proc Natl Acad Sci USA 85:9138–9142

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Wienberg J, Jauch A, Stanyon R et al (1990) Molecular cytotaxonomy of primates by chromosomal in situ suppression hybridization. Genomics 8:347–350

    Article  CAS  PubMed  Google Scholar 

  4. Jauch A, Wienberg J, Stanyon R et al (1992) Reconstruction of genomic rearrangements in great apes and gibbons by chromosome painting. Proc Natl Acad Sci USA 89:8611–8615

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Telenius H, Carter NP, Bebb CE et al (1992) Degenerate oligonucleotide-primed PCR: general amplification of target DNA by a single degenerate primer. Genomics 13:718–725

    Article  CAS  PubMed  Google Scholar 

  6. Telenius H, Pelmear AH, Tunnacliffe A et al (1992) Cytogenetic analysis by chromosome painting using DOP-PCR amplified flow-sorted chromosomes. Genes Chromosomes Cancer 4:257–263

    Article  CAS  PubMed  Google Scholar 

  7. Rabbitts P, Impey H, Heppell-Parton A et al (1995) Chromosome specific paints from a high resolution flow karyotype of the mouse. Nat Genet 9:369–375

    Article  CAS  PubMed  Google Scholar 

  8. Yang F, Muller S, Just R et al (1997) Comparative chromosome painting in mammals: human and the Indian muntjac (Muntiacus muntjak vaginalis). Genomics 39:396–401

    Article  CAS  PubMed  Google Scholar 

  9. Yang F, O’Brien PCM, Milne BS et al (1999) A complete comparative chromosome map for the dog, red fox, and human and its integration with canine genetic maps. Genomics 62:189–202

    Article  CAS  PubMed  Google Scholar 

  10. Deng W, Tsao SW, Lucas JN et al (2003) A new method for improving metaphase chromosome spreading. Cytometry A 51:46–51

    Article  PubMed  Google Scholar 

  11. Henegariu O, Heerema NA, Wright LL et al (2001) Improvements in cytogenetic slide preparation: controlled chromosome spreading, chemical aging and gradual denaturing. Cytometry 43:101–109

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgments

The development of these protocols has been relying on the continuous efforts of our colleagues, graduate students, and collaborators. We are particularly grateful to Malcolm A. Ferguson-Smith and Nigel P. Carter who introduced us to the field of chromosome painting in the early 1990s. We thank Patricia CM O’Brien for a critical reading of the manuscript.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Fengtang Yang .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2017 Springer-Verlag Berlin Heidelberg

About this protocol

Cite this protocol

Yang, F., Graphodatsky, A.S. (2017). Animal Probes and ZOO-FISH. In: Liehr, T. (eds) Fluorescence In Situ Hybridization (FISH). Springer Protocols Handbooks. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-662-52959-1_42

Download citation

  • DOI: https://doi.org/10.1007/978-3-662-52959-1_42

  • Published:

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-662-52957-7

  • Online ISBN: 978-3-662-52959-1

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics