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Isolation of Arabidopsis Pollen, Sperm Cells, and Vegetative Nuclei by Fluorescence-Activated Cell Sorting (FACS)

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Part of the book series: Methods in Molecular Biology ((MIMB,volume 1669))

Abstract

Efficient methods to isolate highly purified Arabidopsis thaliana pollen and the subcellular components of the male gametophyte (the vegetative nucleus and two sperm cells) have enabled genome-scale studies revealing a highly dynamic reprogramming of the transcriptome and epigenome during pollen development. Here, we describe the isolation of uninucleate microspores, mature pollen, as well as sperm cells and vegetative nuclei by Fluorescence-Activated Cell Sorting.

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References

  1. Rutley N, Twell D (2015) A decade of pollen transcriptomics. Plant Reprod 28:73–89

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  2. Johnson-Brousseau SA, McCormick S (2004) A compendium of methods useful for characterizing Arabidopsis pollen mutants and gametophytically-expressed genes. Plant J 39:761–775

    Article  CAS  PubMed  Google Scholar 

  3. Dupl’áková N, Dobrev PI, Reňák D, Honys D (2016) Rapid separation of Arabidopsis male gametophyte developmental stages using a Percoll gradient. Nat Protoc 11:1817–1832

    Article  PubMed  Google Scholar 

  4. Calarco JP, Borges F, Donoghue MTA et al (2012) Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA. Cell 151:194–205

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Ibarra CA, Feng X, Schoft VK et al (2012) Active DNA demethylation in plant companion cells reinforces transposon methylation in gametes. Science 337:1360–1364

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. Wibowo A, Becker C, Marconi G et al (2016) Hyperosmotic stress memory in Arabidopsis is mediated by distinct epigenetically labile sites in the genome and is restricted in the male germline by DNA glycosylase activity. Elife 5:e13546

    Google Scholar 

  7. Zhang Z, Xu H, Singh MB, Russell SD (1998) Isolation and collection of two populations of viable sperm cells from the pollen of Plumbago zeylanica. Zygote 6:295–298

    Article  CAS  PubMed  Google Scholar 

  8. Russell SD, Gou X, Wong CE et al (2012) Genomic profiling of rice sperm cell transcripts reveals conserved and distinct elements in the flowering plant male germ lineage. New Phytol 195:560–573

    Article  CAS  PubMed  Google Scholar 

  9. Lu Y, Wei L, Wang T (2015) Methods to isolate a large amount of generative cells, sperm cells and vegetative nuclei from tomato pollen for “omics” analysis. Front Plant Sci 6:391

    PubMed  PubMed Central  Google Scholar 

  10. Borges F, Gardner R, Lopes T et al (2012) FACS-based purification of Arabidopsis microspores, sperm cells and vegetative nuclei. Plant Methods 8:44

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Chumak N, Mosiolek M, Schoft VK (2015) Sample preparation and fractionation of Arabidopsis thaliana sperm and vegetative cell nuclei by FACS. Bio-Protocol 5:e1664

    Article  Google Scholar 

  12. Schoft VK, Chumak N, Bindics J et al (2015) SYBR green-activated sorting of Arabidopsis pollen nuclei based on different DNA/RNA content. Plant Reprod 28:61–72

    Article  CAS  PubMed  Google Scholar 

  13. Macaulay IC, Teng MJ, Haerty W et al (2016) Separation and parallel sequencing of the genomes and transcriptomes of single cells using G&T-seq. Nat Protoc 11:2081–2103

    Article  CAS  PubMed  Google Scholar 

  14. Boavida LC, McCormick S (2007) Temperature as a determinant factor for increased and reproducible in vitro pollen germination in Arabidopsis thaliana. Plant J 52:570–582

    Article  CAS  PubMed  Google Scholar 

  15. Wood JCS (2001) Principles of gating. Curr Protoc Cytom Chapter 1:Unit 1.8

    CAS  PubMed  Google Scholar 

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Acknowledgement

We thank Marta Monteiro, Mariana Fernandes (Flow Cytometry Unit), and Vera Nunes (Plant Facility) for technical support. Leonor Boavida is acknowledged for providing invaluable insight and comments. This work was supported by project EVOREPRO within the framework of the 2nd call ERA-NET for Coordinating Plant Sciences, with funding from Fundacao para a Ciencia e a Tecnologia-FCT (Portugal) through grant ERA-CAPS/0001/2014. J.D.B. received salary support from FCT through an “Investigador FCT” position.

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Correspondence to Jörg D. Becker .

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Santos, M.R., Bispo, C., Becker, J.D. (2017). Isolation of Arabidopsis Pollen, Sperm Cells, and Vegetative Nuclei by Fluorescence-Activated Cell Sorting (FACS). In: Schmidt, A. (eds) Plant Germline Development. Methods in Molecular Biology, vol 1669. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-7286-9_16

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  • DOI: https://doi.org/10.1007/978-1-4939-7286-9_16

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  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-7285-2

  • Online ISBN: 978-1-4939-7286-9

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