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Plant Genomics Databases pp 33–44Cite as

PGSB/MIPS PlantsDB Database Framework for the Integration and Analysis of Plant Genome Data

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Part of the book series: Methods in Molecular Biology ((MIMB,volume 1533))

Abstract

Plant Genome and Systems Biology (PGSB), formerly Munich Institute for Protein Sequences (MIPS) PlantsDB, is a database framework for the integration and analysis of plant genome data, developed and maintained for more than a decade now. Major components of that framework are genome databases and analysis resources focusing on individual (reference) genomes providing flexible and intuitive access to data. Another main focus is the integration of genomes from both model and crop plants to form a scaffold for comparative genomics, assisted by specialized tools such as the CrowsNest viewer to explore conserved gene order (synteny). Data exchange and integrated search functionality with/over many plant genome databases is provided within the transPLANT project.

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Author information

Authors and Affiliations

  1. Plant Genome and Systems Biology, Helmholtz Center Munich, Ingolstaedter Landstr. 1, 85764, Neuherberg, Germany

    Manuel Spannagl, Thomas Nussbaumer, Kai Bader, Heidrun Gundlach & Klaus F. X. Mayer

Authors
  1. Manuel Spannagl
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  2. Thomas Nussbaumer
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  3. Kai Bader
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  4. Heidrun Gundlach
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  5. Klaus F. X. Mayer
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Corresponding author

Correspondence to Manuel Spannagl .

Editor information

Editors and Affiliations

  1. PRI Bioscience, Biometris and Bioinformatics, Wageningen University & Research Wageningen, Wageningen, The Netherlands

    Aalt D.J van Dijk

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Spannagl, M., Nussbaumer, T., Bader, K., Gundlach, H., Mayer, K.F.X. (2017). PGSB/MIPS PlantsDB Database Framework for the Integration and Analysis of Plant Genome Data. In: van Dijk, A. (eds) Plant Genomics Databases. Methods in Molecular Biology, vol 1533. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-6658-5_2

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  • DOI: https://doi.org/10.1007/978-1-4939-6658-5_2

  • Published:

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-6656-1

  • Online ISBN: 978-1-4939-6658-5

  • eBook Packages: Springer Protocols

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