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Avian Influenza Virus RNA Extraction

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Book cover Animal Influenza Virus

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2123))

Abstract

The efficient extraction and purification of viral RNA is critical for downstream molecular applications such as the sensitive and specific detection of virus in clinical samples, virus gene cloning and expression, gene sequencing, or quantification of avian influenza (AI) virus by molecular methods from experimentally infected birds. Samples can generally be divided into two types: enriched (e.g., virus stocks) and non-enriched (e.g., clinical). Clinical samples, which may be tissues or swab material, are the most difficult to process due to the complex sample composition and possibly low virus titers. In this chapter, two well-established procedures for the extraction of AI virus RNA from common clinical specimen types and enriched virus stocks will be presented.

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References

  1. Das A, Spackman E, Pantin-Jackwood MJ, Suarez DL (2009) Removal of real-time reverse transcription polymerase chain reaction (RT-PCR) inhibitors associated with cloacal swab samples and tissues for improved diagnosis of Avian influenza virus by RT-PCR. J Vet Diagn Investig 21(6):771–778

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  2. Spackman E, Senne DA, Myers TJ, Bulaga LL, Garber LP, Perdue ML, Lohman K, Daum LT, Suarez DL (2002) Development of a real-time reverse transcriptase PCR assay for type A influenza virus and the avian H5 and H7 hemagglutinin subtypes. J Clin Microbiol 40(9):3256–3260

    Article  CAS  Google Scholar 

  3. Spackman E, Suarez DL (2005) Use of a novel virus inactivation method for a multicenter avian influenza real-time reverse transcriptase-polymerase chain reaction proficiency study. J Vet Diagn Investig 17(1):76–80

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  4. Erickson GA, Brugh M, Beard CW (1978) Newcastle disease and avian influenza virus stability under simulated shipping conditions. Twenyfirst annual meeting of american association of veterinary laboratory diagnosticians. 309–318

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  5. Das A, Spackman E, Senne D, Pedersen J, Suarez DL (2006) Development of an internal positive control for rapid diagnosis of avian influenza virus infections by real-time reverse transcription-PCR with lyophilized reagents. J Clin Microbiol 44(9):3065–3073

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Correspondence to Erica Spackman .

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© 2020 This is a U.S. government work and not under copyright protection in the U.S.; foreign copyright protection may apply.

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Spackman, E., Lee, S.A. (2020). Avian Influenza Virus RNA Extraction. In: Spackman, E. (eds) Animal Influenza Virus. Methods in Molecular Biology, vol 2123. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0346-8_10

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  • DOI: https://doi.org/10.1007/978-1-0716-0346-8_10

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-0345-1

  • Online ISBN: 978-1-0716-0346-8

  • eBook Packages: Springer Protocols

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