1. Molecular evolution and phylogenetic utility of non-coding DNA: applications from species to deep level questions

   • Thomas Borsch
   • Dietmar Quandt
   • Marcus Koch

   Editorial 07 February 2009 Pages: 107 - 108

2. Phylogenetic models and model selection for noncoding DNA

   • Scot A. Kelchner

   Review 30 July 2008 Pages: 109 - 126

3. A framework for phylogenetic sequence alignment

   • David A. Morrison

   Review 30 July 2008 Pages: 127 - 149

   

4. Homology in coding and non-coding DNA sequences: a parsimony perspective

   • Helga Ochoterena

   Original Article 17 September 2008 Pages: 151 - 168

   

5. Mutational dynamics and phylogenetic utility of noncoding chloroplast DNA

   • Thomas Borsch
   • Dietmar Quandt

   Original Article 04 September 2009 Pages: 169 - 199

   

6. Phylogeny of the eudicot order Malpighiales: analysis of a recalcitrant clade with sequences of the petD group II intron

   • Nadja Korotkova
   • Julio V. Schneider
   • Thomas Borsch

   Original Article 23 January 2009 Pages: 201 - 228

   

7. Evolution of trnF(GAA) pseudogenes in cruciferous plants

   • Roswitha Schmickl
   • Christiane Kiefer
   • Marcus A. Koch

   Original Article 02 July 2008 Pages: 229 - 240

   

8. Fifty mosses on five trees: comparing phylogenetic information in three types of non-coding mitochondrial DNA and two chloroplast loci

   • Ute Wahrmund
   • Theresia Rein
   • Volker Knoop

   Original Article 11 June 2008 Pages: 241 - 255

   

9. Non-coding nuclear DNA markers in phylogenetic reconstruction

   • Miriam Calonje
   • Santiago Martín-Bravo
   • Marcus A. Koch

   Review 21 May 2008 Pages: 257 - 280

   

10. Application of non-coding DNA regions in intraspecific analyses

    • Thekla Pleines
    • Sabine S. Jakob
    • Frank R. Blattner

    Review 01 August 2008 Pages: 281 - 294