1. The Evolution of Guanylyl Cyclases as Multidomain Proteins: Conserved Features of Kinase-Cyclase Domain Fusions

   • Kabir Hassan Biswas
   • Avinash R. Shenoy
   • Sandhya S. Visweswariah

   OriginalPaper 03 June 2009 Pages: 587 - 602

   

2. On the Brink of Holoparasitism: Plastome Evolution in Dwarf Mistletoes (Arceuthobium, Viscaceae)

   • Daniel L. Nickrent
   • Miguel A. García

   OriginalPaper 29 May 2009 Pages: 603 - 615

   

3. What Was the Set of Ubiquitin and Ubiquitin-Like Conjugating Enzymes in the Eukaryote Common Ancestor?

   • Caroline Michelle
   • Patrick Vourc’h
   • Christian R. Andres

   OriginalPaper Open access 19 May 2009 Pages: 616 - 628

   

4. Phylogenetic Analysis of Zebrafish Basic Helix-Loop-Helix Transcription Factors

   • Yong Wang
   • Keping Chen
   • Zhe Yang

   OriginalPaper 16 May 2009 Pages: 629 - 640

   

5. Conservation of Silk Genes in Trichoptera and Lepidoptera

   • Naoyuki Yonemura
   • Kazuei Mita
   • František Sehnal

   OriginalPaper Open access 16 May 2009 Pages: 641 - 653

   

6. Evolution of Transcription Factor Binding Sites in Mammalian Gene Regulatory Regions: Handling Counterintuitive Results

   • James E. Balmer
   • Rune Blomhoff

   OriginalPaper 29 May 2009 Pages: 654 - 664

   

7. The Complete Mitochondrial Genome Sequence of the Hornwort Megaceros aenigmaticus Shows a Mixed Mode of Conservative Yet Dynamic Evolution in Early Land Plant Mitochondrial Genomes

   • Libo Li
   • Bin Wang
   • Yin-Long Qiu

   OriginalPaper 28 May 2009 Pages: 665 - 678

   

8. Gene Conversion Among Paralogs Results in Moderate False Detection of Positive Selection Using Likelihood Methods

   • Claudio Casola
   • Matthew W. Hahn

   OriginalPaper 27 May 2009 Pages: 679 - 687

   

9. A Comparative Approach Shows Differences in Patterns of Numt Insertion During Hominoid Evolution

   • M. I. Jensen-Seaman
   • J. H. Wildschutte
   • N. M. Anthony

   OriginalPaper 27 May 2009 Pages: 688 - 699

   

10. In Silico Prediction of Two Classes of Honeybee Genes with CpG Deficiency or CpG Enrichment and Sorting According to Gene Ontology Classes

    • Yong Wang
    • Frederick C. C. Leung

    OriginalPaper 23 May 2009 Pages: 700 - 705

    

11. An Unusual Recent Expansion of the C-Terminal Domain of RNA Polymerase II in Primate Malaria Parasites Features a Motif Otherwise Found Only in Mammalian Polymerases

    • Sandeep P. Kishore
    • Susan L. Perkins
    • Kirk W. Deitsch

    OriginalPaper 16 May 2009 Pages: 706 - 714

    

12. Structure and Conservation of Tandem Repeats in the Mitochondrial DNA Control Region of the Least Brook Lamprey (Lampetra aepyptera)

    • Matthew M. White
    • Holly R. Martin

    OriginalPaper 16 May 2009 Pages: 715 - 723