Volume 9, issue 1, December 2018
25 articles in this issue
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Ontoserver: a syndicated terminology server
Authors (first, second and last of 4)
- Alejandro Metke-Jimenez
- Jim Steel
- Michael Lawley
- Content type: Software
- Open Access
- Published: 17 September 2018
- Article: 24
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Using predicate and provenance information from a knowledge graph for drug efficacy screening
Authors (first, second and last of 5)
- Wytze J. Vlietstra
- Rein Vos
- Jan A. Kors
- Content type: Research
- Open Access
- Published: 06 September 2018
- Article: 23
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Representing vaccine misinformation using ontologies
Authors
- Muhammad Amith
- Cui Tao
- Content type: Research
- Open Access
- Published: 31 August 2018
- Article: 22
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Biomedical ontology alignment: an approach based on representation learning
Authors (first, second and last of 4)
- Prodromos Kolyvakis
- Alexandros Kalousis
- Dimitris Kiritsis
- Content type: Research
- Open Access
- Published: 15 August 2018
- Article: 21
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EAPB: entropy-aware path-based metric for ontology quality
Authors (first, second and last of 5)
- Ying Shen
- Daoyuan Chen
- Kai Lei
- Content type: Research
- Open Access
- Published: 10 August 2018
- Article: 20
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Adverse event detection by integrating twitter data and VAERS
Authors (first, second and last of 4)
- Junxiang Wang
- Liang Zhao
- Yuji Zhang
- Content type: Research
- Open Access
- Published: 20 June 2018
- Article: 19
This is part of 1 collection: -
Disease mentions in airport and hospital geolocations expose dominance of news events for disease concerns
Authors
- Joana M. Barros
- Jim Duggan
- Dietrich Rebholz-Schuhmann
- Content type: Research
- Open Access
- Published: 12 June 2018
- Article: 18
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Ontology-based literature mining and class effect analysis of adverse drug reactions associated with neuropathy-inducing drugs
Authors
- Junguk Hur
- Arzucan Özgür
- Yongqun He
- Content type: Research
- Open Access
- Published: 07 June 2018
- Article: 17
This is part of 1 collection: -
Querying archetype-based EHRs by search ontology-based XPath engineering
Authors (first, second and last of 6)
- Stefan Kropf
- Alexandr Uciteli
- Heinrich Herre
- Content type: Research
- Open Access
- Published: 11 May 2018
- Article: 16
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Extending the DIDEO ontology to include entities from the natural product drug interaction domain of discourse
Authors (first, second and last of 4)
- John Judkins
- Jessica Tay-Sontheimer
- Mathias Brochhausen
- Content type: Research
- Open Access
- Published: 09 May 2018
- Article: 15
This is part of 1 collection: -
GGDonto ontology as a knowledge-base for genetic diseases and disorders of glycan metabolism and their causative genes
Authors (first, second and last of 4)
- Elena Solovieva
- Toshihide Shikanai
- Hisashi Narimatsu
- Content type: Research
- Open Access
- Published: 18 April 2018
- Article: 14
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Deep learning meets ontologies: experiments to anchor the cardiovascular disease ontology in the biomedical literature
Authors (first, second and last of 10)
- Mercedes Arguello Casteleiro
- George Demetriou
- Robert Stevens
- Content type: Research
- Open Access
- Published: 12 April 2018
- Article: 13
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Clinical Natural Language Processing in languages other than English: opportunities and challenges
Authors (first, second and last of 5)
- Aurélie Névéol
- Hercules Dalianis
- Pierre Zweigenbaum
- Content type: Review
- Open Access
- Published: 30 March 2018
- Article: 12
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Matching biomedical ontologies based on formal concept analysis
Authors (first, second and last of 4)
- Mengyi Zhao
- Songmao Zhang
- Guowei Chen
- Content type: Research
- Open Access
- Published: 19 March 2018
- Article: 11
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Using OWL reasoning to support the generation of novel gene sets for enrichment analysis
Authors (first, second and last of 5)
- David J. Osumi-Sutherland
- Enrico Ponta
- Laura Badi
- Content type: Research
- Open Access
- Published: 14 February 2018
- Article: 10
This is part of 1 collection: -
Supporting shared hypothesis testing in the biomedical domain
Authors (first, second and last of 11)
- Asan Agibetov
- Ernesto Jiménez-Ruiz
- Michela Spagnuolo
- Content type: Research
- Open Access
- Published: 08 February 2018
- Article: 9
This is part of 1 collection: -
DMTO: a realistic ontology for standard diabetes mellitus treatment
Authors (first, second and last of 4)
- Shaker El-Sappagh
- Daehan Kwak
- Kyung-Sup Kwak
- Content type: Research
- Open Access
- Published: 06 February 2018
- Article: 8
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Exploiting graph kernels for high performance biomedical relation extraction
Authors (first, second and last of 4)
- Nagesh C. Panyam
- Karin Verspoor
- Kotagiri Ramamohanarao
- Content type: Research
- Open Access
- Published: 30 January 2018
- Article: 7
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MIRO: guidelines for minimum information for the reporting of an ontology
Authors (first, second and last of 4)
- Nicolas Matentzoglu
- James Malone
- Robert Stevens
- Content type: Review
- Open Access
- Published: 18 January 2018
- Article: 6
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OpenBiodiv-O: ontology of the OpenBiodiv knowledge management system
Authors (first, second and last of 9)
- Viktor Senderov
- Kiril Simov
- Lyubomir Penev
- Content type: Research
- Open Access
- Published: 18 January 2018
- Article: 5
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Tackling the challenges of matching biomedical ontologies
Authors (first, second and last of 6)
- Daniel Faria
- Catia Pesquita
- Isabel F. Cruz
- Content type: Research
- Open Access
- Published: 15 January 2018
- Article: 4
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The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability
Authors (first, second and last of 6)
- Yongqun He
- Zuoshuang Xiang
- Edison Ong
- Content type: Review
- Open Access
- Published: 12 January 2018
- Article: 3
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CUILESS2016: a clinical corpus applying compositional normalization of text mentions
Authors (first, second and last of 5)
- John D. Osborne
- Matthew B. Neu
- Steven J. Bethard
- Content type: Research
- Open Access
- Published: 10 January 2018
- Article: 2
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Improving the interoperability of biomedical ontologies with compound alignments
Authors
- Daniela Oliveira
- Catia Pesquita
- Content type: Research
- Open Access
- Published: 09 January 2018
- Article: 1