Volume 3, issue 1, December 2012

22 articles in this issue

Two large-scale analyses of Ty1 LTR-retrotransposon de novo insertion events indicate that Ty1 targets nucleosomal DNA near the H2A/H2B interface

Authors
- Antoine Bridier-Nahmias
- Pascale Lesage
- Content type: Commentary
- Open Access
- Published: 17 December 2012
- Article: 22
The Mu story: how a maverick phage moved the field forward

Authors
- Rasika M Harshey
- Content type: Review
- Open Access
- Published: 05 December 2012
- Article: 21
Strong purifying selection in endogenous retroviruses in the saltwater crocodile (Crocodylus porosus) in the Northern Territory of Australia

Authors (first, second and last of 4)
- Amanda Yoon-Yee Chong
- Sarah Jane Atkinson
- Jaime Gongora
- Content type: Research
- Open Access
- Published: 05 December 2012
- Article: 20
Genomic impact of eukaryotic transposable elements

Authors (first, second and last of 7)
- Irina R Arkhipova
- Mark A Batzer
- Jerzy Jurka
- Content type: Meeting Report
- Open Access
- Published: 21 November 2012
- Article: 19
LTRsift: a graphical user interface for semi-automatic classification and postprocessing of de novo detected LTR retrotransposons

Authors
- Sascha Steinbiss
- Sascha Kastens
- Stefan Kurtz
- Content type: Software
- Open Access
- Published: 07 November 2012
- Article: 18
International Congress on Transposable Elements (ICTE) 2012 in Saint Malo and the sea of TE stories

Authors (first, second and last of 12)
- Abdelkader Ainouche
- Mireille Bétermier
- Clémentine Vitte
- Content type: Meeting Report
- Open Access
- Published: 30 October 2012
- Article: 17
Review of Mobile DNA - finding treasure in junk by Haig H Kazazian

Authors
- Cédric Feschotte
- Content type: Book review
- Open Access
- Published: 03 October 2012
- Article: 16
Cell type-specific termination of transcription by transposable element sequences

Authors
- Andrew B Conley
- I King Jordan
- Content type: Research
- Open Access
- Published: 30 September 2012
- Article: 15
Horizontal transfers of Mariner transposons between mammals and insects

Authors (first, second and last of 4)
- Sarah G Oliveira
- Weidong Bao
- Jerzy Jurka
- Content type: Short Report
- Open Access
- Published: 26 September 2012
- Article: 14
Mar, a MITE family of hAT transposons in Drosophila

Authors (first, second and last of 4)
- Maríndia Deprá
- Adriana Ludwig
- Elgion LS Loreto
- Content type: Research
- Open Access
- Published: 31 August 2012
- Article: 13
Host co-factors of the retrovirus-like transposon Ty1

Authors (first, second and last of 5)
- Jenni K Risler
- Alison E Kenny
- M Joan Curcio
- Content type: Research
- Open Access
- Published: 02 August 2012
- Article: 12
Alu expression in human cell lines and their retrotranspositional potential

Authors (first, second and last of 6)
- Andrew J Oler
- Stephen Traina-Dorge
- Astrid M Roy-Engel
- Content type: Short Report
- Open Access
- Published: 20 June 2012
- Article: 11
R2 and R2/R1 hybrid non-autonomous retrotransposons derived by internal deletions of full-length elements

Authors
- Danna G Eickbush
- Thomas H Eickbush
- Content type: Research
- Open Access
- Published: 23 May 2012
- Article: 10
C-GATE - catalogue of genes affected by transposable elements

Authors
- Rita Rebollo
- Sharareh Farivar
- Dixie L Mager
- Content type: Short Report
- Open Access
- Published: 23 May 2012
- Article: 9
Orangutan Alu quiescence reveals possible source element: support for ancient backseat drivers

Authors (first, second and last of 8)
- Jerilyn A Walker
- Miriam K Konkel
- Mark A Batzer
- Content type: Research
- Open Access
- Published: 30 April 2012
- Article: 8
Identification of basepairs within Tn5 termini that are critical sfor H-NS binding to the transpososome and regulation of Tn5 transposition

Authors
- Crystal R Whitfield
- Brian H Shilton
- David B Haniford
- Content type: Research
- Open Access
- Published: 13 April 2012
- Article: 7
Towards a more accurate annotation of tyrosine-based site-specific recombinases in bacterial genomes

Authors (first, second and last of 5)
- Rob Van Houdt
- Raphael Leplae
- Ariane Toussaint
- Content type: Research
- Open Access
- Published: 13 April 2012
- Article: 6
How does selfing affect the dynamics of selfish transposable elements?

Authors
- Thibaud S Boutin
- Arnaud Le Rouzic
- Pierre Capy
- Content type: Research
- Open Access
- Published: 07 March 2012
- Article: 5
Copy number variation of ribosomal DNA and Pokey transposons in natural populations of Daphnia

Authors
- Shannon HC Eagle
- Teresa J Crease
- Content type: Research
- Open Access
- Published: 05 March 2012
- Article: 4
Insertion site preference of Mu, Tn5, and Tn7 transposons

Authors (first, second and last of 5)
- Brian Green
- Christiane Bouchier
- Brendan P Cormack
- Content type: Short Report
- Open Access
- Published: 07 February 2012
- Article: 3
The predominantly selfing plant Arabidopsis thaliana experienced a recent reduction in transposable element abundance compared to its outcrossing relative Arabidopsis lyrata

Authors (first, second and last of 4)
- Nicole de la Chaux
- Takashi Tsuchimatsu
- Andreas Wagner
- Content type: Research
- Open Access
- Published: 07 February 2012
- Article: 2
Protein-DNA interactions define the mechanistic aspects of circle formation and insertion reactions in IS2 transposition

Authors (first, second and last of 9)
- Leslie A Lewis
- Mekbib Astatke
- Duarte MF Prazeres
- Content type: Research
- Open Access
- Published: 26 January 2012
- Article: 1

Volume 3, issue 1, December 2012

Two large-scale analyses of Ty1 LTR-retrotransposon de novo insertion events indicate that Ty1 targets nucleosomal DNA near the H2A/H2B interface

The Mu story: how a maverick phage moved the field forward

Strong purifying selection in endogenous retroviruses in the saltwater crocodile (Crocodylus porosus) in the Northern Territory of Australia

Genomic impact of eukaryotic transposable elements

LTRsift: a graphical user interface for semi-automatic classification and postprocessing of de novo detected LTR retrotransposons

International Congress on Transposable Elements (ICTE) 2012 in Saint Malo and the sea of TE stories

Review of Mobile DNA - finding treasure in junk by Haig H Kazazian

Cell type-specific termination of transcription by transposable element sequences

Horizontal transfers of Mariner transposons between mammals and insects

Mar, a MITE family of hAT transposons in Drosophila

Host co-factors of the retrovirus-like transposon Ty1

Alu expression in human cell lines and their retrotranspositional potential

R2 and R2/R1 hybrid non-autonomous retrotransposons derived by internal deletions of full-length elements

C-GATE - catalogue of genes affected by transposable elements

Orangutan Alu quiescence reveals possible source element: support for ancient backseat drivers

Identification of basepairs within Tn5 termini that are critical sfor H-NS binding to the transpososome and regulation of Tn5 transposition

Towards a more accurate annotation of tyrosine-based site-specific recombinases in bacterial genomes

How does selfing affect the dynamics of selfish transposable elements?

Copy number variation of ribosomal DNA and Pokey transposons in natural populations of Daphnia

Insertion site preference of Mu, Tn5, and Tn7 transposons

The predominantly selfing plant Arabidopsis thaliana experienced a recent reduction in transposable element abundance compared to its outcrossing relative Arabidopsis lyrata

Protein-DNA interactions define the mechanistic aspects of circle formation and insertion reactions in IS2 transposition

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