Volume 13, issue 1, December 2022
32 articles in this issue
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CAULIFINDER: a pipeline for the automated detection and annotation of caulimovirid endogenous viral elements in plant genomes
Authors (first, second and last of 11)
- Héléna Vassilieff
- Sana Haddad
- Florian Maumus
- Content type: Software
- Open Access
- Published: 03 December 2022
- Article: 31
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Generalized nuclear localization of retroelement transcripts
Authors
- Simanti Das
- Amanda E. Jones
- John M. Abrams
- Content type: Research
- Open Access
- Published: 02 December 2022
- Article: 30
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T3E: a tool for characterising the epigenetic profile of transposable elements using ChIP-seq data
Authors
- Michelle Almeida da Paz
- Leila Taher
- Content type: Methodology
- Open Access
- Published: 30 November 2022
- Article: 29
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Recurrent co-domestication of PIF/Harbinger transposable element proteins in insects
Authors (first, second and last of 5)
- Dragomira N. Markova
- Fatema B. Ruma
- Esther Betrán
- Content type: Research
- Open Access
- Published: 30 November 2022
- Article: 28
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The coevolution between APOBEC3 and retrotransposons in primates
Authors
- Giorgia Modenini
- Paolo Abondio
- Alessio Boattini
- Content type: Review
- Open Access
- Published: 29 November 2022
- Article: 27
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A proteomic screen of Ty1 integrase partners identifies the protein kinase CK2 as a regulator of Ty1 retrotransposition
Authors (first, second and last of 9)
- Anastasia Barkova
- Indranil Adhya
- Joël Acker
- Content type: Research
- Open Access
- Published: 18 November 2022
- Article: 26
This is part of 2 collections: -
Exploration of the regulatory relationship between KRAB-Zfp clusters and their target transposable elements via a gene editing strategy at the cluster specific linker-associated sequences by CRISPR-Cas9
Authors (first, second and last of 8)
- Yang Zhang
- Fei He
- Bo Cheng
- Content type: Research
- Open Access
- Published: 10 November 2022
- Article: 25
This is part of 2 collections: -
A unique eukaryotic lineage of composite-like DNA transposons encoding a DDD/E transposase and a His-Me finger homing endonuclease
Authors
- Kenji K. Kojima
- Weidong Bao
- Content type: Research
- Open Access
- Published: 22 October 2022
- Article: 24
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Mobile group I introns at nuclear rDNA position L2066 harbor sense and antisense homing endonuclease genes intervened by spliceosomal introns
Authors (first, second and last of 5)
- Kjersti Lian
- Betty M. N. Furulund
- Steinar D. Johansen
- Content type: Research
- Open Access
- Published: 08 October 2022
- Article: 23
This is part of 2 collections: -
Transcriptional dynamics of transposable elements in the type I IFN response in Myotis lucifugus cells
Authors (first, second and last of 4)
- Giulia Irene Maria Pasquesi
- Conor J. Kelly
- Edward B. Chuong
- Content type: Research
- Open Access
- Published: 06 September 2022
- Article: 22
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SCIFER: approach for analysis of LINE-1 mRNA expression in single cells at a single locus resolution
Authors (first, second and last of 6)
- Emily C. Stow
- Melody Baddoo
- Victoria Belancio
- Content type: Research
- Open Access
- Published: 26 August 2022
- Article: 21
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Multiple horizontal transfers of a Helitron transposon associated with a parasitoid wasp
Authors
- Pedro Heringer
- Gustavo C. S. Kuhn
- Content type: Brief Report
- Open Access
- Published: 19 August 2022
- Article: 20
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Genomic analysis reveals the role of integrative and conjugative elements in plant pathogenic bacteria
Authors (first, second and last of 6)
- Jéssica Catarine Silva de Assis
- Osiel Silva Gonçalves
- Mateus Ferreira Santana
- Content type: Research
- Open Access
- Published: 12 August 2022
- Article: 19
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Amplification of LTRs of extrachromosomal linear DNAs (ALE-seq) identifies two active Oryco LTR retrotransposons in the rice cultivar Dongjin
Authors (first, second and last of 7)
- Hyunjin Koo
- Soomin Kim
- Tae-Jin Yang
- Content type: Brief Report
- Open Access
- Published: 13 June 2022
- Article: 18
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Correction: Characterization of transposable elements within the Bemisia tabaci species complex
Authors (first, second and last of 5)
- Juan Paolo A. Sicat
- Paul Visendi
- Susan E. Seal
- Content type: Correction
- Open Access
- Published: 08 June 2022
- Article: 17
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Comprehensive analysis of both long and short read transcriptomes of a clonal and a seed-propagated model species reveal the prerequisites for transcriptional activation of autonomous and non-autonomous transposons in plants
Authors
- Ting-Hsuan Chen
- Christopher Winefield
- Content type: Research
- Open Access
- Published: 12 May 2022
- Article: 16
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Correction: A beginner’s guide to manual curation of transposable elements
Authors (first, second and last of 6)
- Clement Goubert
- Rory J. Craig
- Anna V. Protasio
- Content type: Correction
- Open Access
- Published: 04 May 2022
- Article: 15
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Software evaluation for de novo detection of transposons
Authors
- Matias Rodriguez
- Wojciech Makałowski
- Content type: Software
- Open Access
- Published: 27 April 2022
- Article: 14
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Subfamily-specific differential contribution of individual monomers and the tether sequence to mouse L1 promoter activity
Authors (first, second and last of 11)
- Lingqi Kong
- Karabi Saha
- Wenfeng An
- Content type: Research
- Open Access
- Published: 20 April 2022
- Article: 13
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Characterization of transposable elements within the Bemisia tabaci species complex
Authors (first, second and last of 5)
- Juan Paolo A. Sicat
- Paul Visendi
- Susan E. Seal
- Content type: Research
- Open Access
- Published: 19 April 2022
- Article: 12
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TE Density: a tool to investigate the biology of transposable elements
Authors
- Scott J. Teresi
- Michael B. Teresi
- Patrick P. Edger
- Content type: Software
- Open Access
- Published: 12 April 2022
- Article: 11
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RNA sensor MDA5 suppresses LINE-1 retrotransposition by regulating the promoter activity of LINE-1 5′-UTR
Authors (first, second and last of 9)
- Jiaxiu Yan
- Yifei Zhao
- Ke Zhao
- Content type: Research
- Open Access
- Published: 12 April 2022
- Article: 10
This is part of 1 collection: -
SETMAR, a case of primate co-opted genes: towards new perspectives
Authors
- Oriane Lié
- Sylvaine Renault
- Corinne Augé-Gouillou
- Content type: Review
- Open Access
- Published: 08 April 2022
- Article: 9
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The structural diversity of CACTA transposons in genomes of Chenopodium (Amaranthaceae, Caryophyllales) species: specific traits and comparison with the similar elements of angiosperms
Authors (first, second and last of 7)
- Alexander Belyayev
- Jiřina Josefiová
- Karol Krak
- Content type: Research
- Open Access
- Published: 04 April 2022
- Article: 8
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A beginner’s guide to manual curation of transposable elements
Authors (first, second and last of 6)
- Clement Goubert
- Rory J. Craig
- Anna V. Protasio
- Content type: Methodology
- Open Access
- Published: 30 March 2022
- Article: 7
This is part of 2 collections: -
Eco-evolutionary significance of domesticated retroelements in microbial genomes
Authors
- Blair G. Paul
- A. Murat Eren
- Content type: Review
- Open Access
- Published: 23 February 2022
- Article: 6
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Migrators within migrators: exploring transposable element dynamics in the monarch butterfly, Danaus plexippus
Authors
- Tobias Baril
- Alexander Hayward
- Content type: Research
- Open Access
- Published: 16 February 2022
- Article: 5
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KRAB zinc finger protein ZNF676 controls the transcriptional influence of LTR12-related endogenous retrovirus sequences
Authors (first, second and last of 10)
- Alexandra Iouranova
- Delphine Grun
- Didier Trono
- Content type: Research
- Open Access
- Published: 18 January 2022
- Article: 4
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The fifth Japanese meeting on biological function and evolution through interactions between hosts and transposable elements
Authors
- Kenji Ichiyanagi
- Kuniaki Saito
- Content type: Meeting Report
- Open Access
- Published: 13 January 2022
- Article: 3
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Response from Varani et al. to “Comment on ‘the IS6 family, a clinically important group of insertion sequences including IS26’ by Ruth M. Hall”
Authors (first, second and last of 5)
- Alessandro Varani
- Susu He
- Michael Chandler
- Content type: Correspondence
- Open Access
- Published: 03 January 2022
- Article: 2
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Comment on “the IS6 family, a clinically important group of insertion sequences including IS26” by Varani and co-authors
Authors
- Ruth M. Hall
- Content type: Letter to the Editor
- Open Access
- Published: 03 January 2022
- Article: 1