A benchmark of transposon insertion detection tools using real data
Authors (first, second and last of 6)
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Volume 10, issue 1, December 2019
53 articles in this issue
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Tools and best practices for retrotransposon analysis using high-throughput sequencing data
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Nested plant LTR retrotransposons target specific regions of other elements, while all LTR retrotransposons often target palindromes and nucleosome-occupied regions: in silico study
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Stowaway miniature inverted repeat transposable elements are important agents driving recent genomic diversity in wild and cultivated carrot
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Alu insertion polymorphisms shared by Papio baboons and Theropithecus gelada reveal an intertwined common ancestry
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Incomer, a DD36E family of Tc1/mariner transposons newly discovered in animals
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A genomic survey of transposable elements in the choanoflagellate Salpingoeca rosetta reveals selection on codon usage
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High frequency of horizontal transfer in Jockey families (LINE order) of drosophilids
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Sex and the TEs: transposable elements in sexual development and function in animals
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Correction to: Transcriptome analyses of tumor-adjacent somatic tissues reveal genes co-expressed with transposable elements
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Transcriptome analyses of tumor-adjacent somatic tissues reveal genes co-expressed with transposable elements
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Characterization of the endogenous retrovirus insertion in CYP19A1 associated with henny feathering in chicken
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Variable genome evolution in fungi after transposon-mediated amplification of a housekeeping gene
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A human endogenous retrovirus encoded protease potentially cleaves numerous cellular proteins
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Nuclear export signal (NES) of transposases affects the transposition activity of mariner-like elements Ppmar1 and Ppmar2 of moso bamboo
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Study of VIPER and TATE in kinetoplastids and the evolution of tyrosine recombinase retrotransposons
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Convergence in LINE-1 nucleotide variations can benefit redundantly forming triplexes with lncRNA in mammalian X-chromosome inactivation
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Diseases of the nERVous system: retrotransposon activity in neurodegenerative disease
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AluMine: alignment-free method for the discovery of polymorphic Alu element insertions
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Differential retention of transposable element-derived sequences in outcrossing Arabidopsis genomes
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Amplification of miniature inverted-repeat transposable elements and the associated impact on gene regulation and alternative splicing in mulberry (Morus notabilis)
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Characterization of a novel Helitron family in insect genomes: insights into classification, evolution and horizontal transfer
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Targeted gene knockin in zebrafish using the 28S rDNA-specific non-LTR-retrotransposon R2Ol
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MGERT: a pipeline to retrieve coding sequences of mobile genetic elements from genome assemblies
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Identification of charged amino acids required for nuclear localization of human L1 ORF1 protein
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Retrotransposons evolution and impact on lncRNA and protein coding genes in pigs
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Characterization of a relaxase belonging to the MOBT family, a widespread family in Firmicutes mediating the transfer of ICEs
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Insertion of a chimeric retrotransposon sequence in mouse Axin1 locus causes metastable kinky tail phenotype
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Transcriptionally promiscuous “blurry” promoters in Tc1/mariner transposons allow transcription in distantly related genomes
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Evolution of Mutator transposable elements across eukaryotic diversity
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The impact of transposable element activity on therapeutically relevant human stem cells
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Transposon insertion profiling by sequencing (TIPseq) for mapping LINE-1 insertions in the human genome
Authors (first, second and last of 13)
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The toxic guardians — multiple toxin-antitoxin systems provide stability, avoid deletions and maintain virulence genes of Pseudomonas syringae virulence plasmids
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RepetDB: a unified resource for transposable element references
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Retrophylogenomics in rorquals indicate large ancestral population sizes and a rapid radiation
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Features of a novel protein, rusticalin, from the ascidian Styela rustica reveal ancestral horizontal gene transfer event
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