Volume 8, issue 6, June 2007
37 articles in this issue
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The calpains: modular designs and functional diversity
Authors
- Dorothy E Croall
- Klaus Ersfeld
- Content type: Protein family review
- Published: 02 July 2007
- Article: 218
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Pyrosequencing positions nucleosomes precisely
Authors
- Tom Owen-Hughes
- Maik Engeholm
- Content type: Minireview
- Published: 27 June 2007
- Article: 217
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Topological variation in single-gene phylogenetic trees
Authors
- Jose Castresana
- Content type: Minireview
- Published: 13 June 2007
- Article: 216
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An idea whose time has gone
Authors
- Gregory A Petsko
- Content type: Comment
- Published: 02 July 2007
- Article: 107
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Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
Authors (first, second and last of 7)
- Yingyin Yao
- Ganggang Guo
- Qixin Sun
- Content type: Research
- Open Access
- Published: 01 June 2007
- Article: R96
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Computational and transcriptional evidence for microRNAs in the honey bee genome
Authors (first, second and last of 10)
- Daniel B Weaver
- Juan M Anzola
- Christine G Elsik
- Content type: Research
- Open Access
- Published: 01 June 2007
- Article: R97
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Mixture modeling of transcript abundance classes in natural populations
Authors (first, second and last of 4)
- Wen-Ping Hsieh
- Gisele Passador-Gurgel
- Greg Gibson
- Content type: Research
- Open Access
- Published: 04 June 2007
- Article: R98
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Did an ancient chlamydial endosymbiosis facilitate the establishment of primary plastids?
Authors
- Jinling Huang
- Johann Peter Gogarten
- Content type: Research
- Open Access
- Published: 04 June 2007
- Article: R99
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Genetic flux over time in the Salmonella lineage
Authors
- Georgios S Vernikos
- Nicholas R Thomson
- Julian Parkhill
- Content type: Research
- Open Access
- Published: 04 June 2007
- Article: R100
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Large-scale analysis of transcriptional cis-regulatory modules reveals both common features and distinct subclasses
Authors (first, second and last of 5)
- Long Li
- Qianqian Zhu
- Marc S Halfon
- Content type: Research
- Open Access
- Published: 05 June 2007
- Article: R101
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Comparison of Francisella tularensis genomes reveals evolutionary events associated with the emergence of human pathogenic strains
Authors (first, second and last of 35)
- Laurence Rohmer
- Christine Fong
- Mitchell J Brittnacher
- Content type: Research
- Open Access
- Published: 05 June 2007
- Article: R102
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Characterization and modeling of the Haemophilus influenzae core and supragenomes based on the complete genomic sequences of Rd and 12 clinical nontypeable strains
Authors (first, second and last of 8)
- Justin S Hogg
- Fen Z Hu
- Garth D Ehrlich
- Content type: Research
- Open Access
- Published: 05 June 2007
- Article: R103
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A functional map of NFκB signaling identifies novel modulators and multiple system controls
Authors (first, second and last of 5)
- Thomas A Halsey
- Longlong Yang
- Russell S Thomas
- Content type: Research
- Open Access
- Published: 06 June 2007
- Article: R104
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RAD marker microarrays enable rapid mapping of zebrafish mutations
Authors (first, second and last of 7)
- Michael R Miller
- Tressa S Atwood
- Eric A Johnson
- Content type: Method
- Open Access
- Published: 06 June 2007
- Article: R105
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Functional diversification of sonic hedgehog paralog enhancers identified by phylogenomic reconstruction
Authors (first, second and last of 6)
- Yavor Hadzhiev
- Michael Lang
- Ferenc Müller
- Content type: Research
- Open Access
- Published: 08 June 2007
- Article: R106
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Large-scale identification of human genes implicated in epidermal barrier function
Authors (first, second and last of 10)
- Eve Toulza
- Nicolas R Mattiuzzo
- Marina Guerrin
- Content type: Research
- Open Access
- Published: 11 June 2007
- Article: R107
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Functional coordination of alternative splicing in the mammalian central nervous system
Authors (first, second and last of 17)
- Matthew Fagnani
- Yoseph Barash
- Benjamin J Blencowe
- Content type: Research
- Open Access
- Published: 12 June 2007
- Article: R108
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The human phylome
Authors (first, second and last of 4)
- Jaime Huerta-Cepas
- Hernán Dopazo
- Toni Gabaldón
- Content type: Research
- Open Access
- Published: 13 June 2007
- Article: R109
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A semi-quantitative GeLC-MS analysis of temporal proteome expression in the emerging nosocomial pathogen Ochrobactrum anthropi
Authors (first, second and last of 6)
- Robert Leslie James Graham
- Mohit K Sharma
- Geoff McMullan
- Content type: Research
- Open Access
- Published: 13 June 2007
- Article: R110
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Celsius: a community resource for Affymetrix microarray data
Authors (first, second and last of 5)
- Allen Day
- Marc RJ Carlson
- Stanley F Nelson
- Content type: Method
- Open Access
- Published: 14 June 2007
- Article: R112
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LongSAGE profiling of nine human embryonic stem cell lines
Authors (first, second and last of 32)
- Martin Hirst
- Allen Delaney
- Marco A Marra
- Content type: Method
- Open Access
- Published: 14 June 2007
- Article: R113
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Detailed analysis of 15q11-q14 sequence corrects errors and gaps in the public access sequence to fully reveal large segmental duplications at breakpoints for Prader-Willi, Angelman, and inv dup(15) syndromes
Authors
- Andrew J Makoff
- Rachel H Flomen
- Content type: Research
- Open Access
- Published: 15 June 2007
- Article: R114
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LongSAGE analysis of skeletal muscle at three prenatal stages in Tongcheng and Landrace pigs
Authors (first, second and last of 10)
- Zhonglin Tang
- Yong Li
- Kui Li
- Content type: Research
- Open Access
- Published: 16 June 2007
- Article: R115
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GC- and AT-rich chromatin domains differ in conformation and histone modification status and are differentially modulated by Rpd3p
Authors
- Job Dekker
- Content type: Research
- Open Access
- Published: 18 June 2007
- Article: R116
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Genetic background influences murine prostate gene expression: implications for cancer phenotypes
Authors (first, second and last of 5)
- Daniella Bianchi-Frias
- Colin Pritchard
- Peter S Nelson
- Content type: Research
- Open Access
- Published: 18 June 2007
- Article: R117
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Fast-evolving noncoding sequences in the human genome
Authors (first, second and last of 9)
- Christine P Bird
- Barbara E Stranger
- Emmanouil T Dermitzakis
- Content type: Research
- Open Access
- Published: 19 June 2007
- Article: R118
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The Sas3p and Gcn5p histone acetyltransferases are recruited to similar genes
Authors (first, second and last of 5)
- Lorena E Rosaleny
- Ana B Ruiz-GarcÃa
- Vicente Tordera
- Content type: Research
- Open Access
- Published: 20 June 2007
- Article: R119
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Genome position and gene amplification
Authors (first, second and last of 8)
- Pavla Gajduskova
- Antoine M Snijders
- Donna G Albertson
- Content type: Research
- Open Access
- Published: 21 June 2007
- Article: R120
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Evolutionary history and functional implications of protein domains and their combinations in eukaryotes
Authors (first, second and last of 5)
- Masumi Itoh
- Jose C Nacher
- Minoru Kanehisa
- Content type: Research
- Open Access
- Published: 25 June 2007
- Article: R121
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Toxicogenomic analysis of Caenorhabditis elegans reveals novel genes and pathways involved in the resistance to cadmium toxicity
Authors (first, second and last of 5)
- Yuxia Cui
- Sandra J McBride
- Jonathan H Freedman
- Content type: Research
- Open Access
- Published: 25 June 2007
- Article: R122
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Observing metabolic functions at the genome scale
Authors (first, second and last of 5)
- Jean-Marc Schwartz
- Claire Gaugain
- Minoru Kanehisa
- Content type: Research
- Open Access
- Published: 26 June 2007
- Article: R123
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Measuring the accuracy of genome-size multiple alignments
Authors
- Amol Prakash
- Martin Tompa
- Content type: Method
- Open Access
- Published: 26 June 2007
- Article: R124
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Correcting for sequence biases in present/absent calls
Authors (first, second and last of 4)
- Eugene F Schuster
- Eric Blanc
- Janet M Thornton
- Content type: Method
- Open Access
- Published: 26 June 2007
- Article: R125
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Estimation and correction of non-specific binding in a large-scale spike-in experiment
Authors (first, second and last of 4)
- Eugene F Schuster
- Eric Blanc
- Janet M Thornton
- Content type: Research
- Open Access
- Published: 26 June 2007
- Article: R126
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Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome
Authors (first, second and last of 6)
- Noa Sela
- Britta Mersch
- Gil Ast
- Content type: Research
- Open Access
- Published: 27 June 2007
- Article: R127
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Morphine effects on striatal transcriptome in mice
Authors (first, second and last of 5)
- Michal Korostynski
- Marcin Piechota
- Ryszard Przewlocki
- Content type: Research
- Open Access
- Published: 28 June 2007
- Article: R128