Volume 7, supplement issue 1, August 2006
EGASP '05: ENCODE Genome Annotation Assessment Project
- Issue editors
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- Roderic Guigó
- Martin G Reese
13 articles in this issue
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EGASP: the human ENCODE Genome Annotation Assessment Project
Authors (first, second and last of 18)
- Roderic Guigó
- Paul Flicek
- Martin G Reese
- Content type: Review
- Published: 07 August 2006
- Article: S2
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Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment
Authors (first, second and last of 8)
- Vladimir B Bajic
- Michael R Brent
- Sin Lam Tan
- Content type: Review
- Published: 07 August 2006
- Article: S3
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GENCODE: producing a reference annotation for ENCODE
Authors (first, second and last of 15)
- Jennifer Harrow
- France Denoeud
- Roderic Guigo
- Content type: Research
- Open Access
- Published: 07 August 2006
- Article: S4
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Pairagon+N-SCAN_EST: a model-based gene annotation pipeline
Authors (first, second and last of 4)
- Manimozhiyan Arumugam
- Chaochun Wei
- Michael R Brent
- Content type: Research
- Open Access
- Published: 07 August 2006
- Article: S5
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Vertebrate gene finding from multiple-species alignments using a two-level strategy
Authors
- David Carter
- Richard Durbin
- Content type: Research
- Open Access
- Published: 07 August 2006
- Article: S6
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Exogean: a framework for annotating protein-coding genes in eukaryotic genomic DNA
Authors
- Sarah Djebali
- Franck Delaplace
- Hugues Roest Crollius
- Content type: Research
- Open Access
- Published: 07 August 2006
- Article: S7
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Using several pair-wise informant sequences for de novo prediction of alternatively spliced transcripts
Authors
- Paul Flicek
- Michael R Brent
- Content type: Research
- Open Access
- Published: 07 August 2006
- Article: S8
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JIGSAW, GeneZilla, and GlimmerHMM: puzzling out the features of human genes in the ENCODE regions
Authors (first, second and last of 4)
- Jonathan E Allen
- William H Majoros
- Steven L Salzberg
- Content type: Research
- Open Access
- Published: 07 August 2006
- Article: S9
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Automatic annotation of eukaryotic genes, pseudogenes and promoters
Authors (first, second and last of 4)
- Victor Solovyev
- Peter Kosarev
- Denis Vorobyev
- Content type: Research
- Open Access
- Published: 07 August 2006
- Article: S10
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AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome
Authors
- Mario Stanke
- Ana Tzvetkova
- Burkhard Morgenstern
- Content type: Research
- Open Access
- Published: 07 August 2006
- Article: S11
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AceView: a comprehensive cDNA-supported gene and transcripts annotation
Authors
- Danielle Thierry-Mieg
- Jean Thierry-Mieg
- Content type: Research
- Open Access
- Published: 07 August 2006
- Article: S12
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A computational approach for identifying pseudogenes in the ENCODE regions
Authors
- Deyou Zheng
- Mark B Gerstein
- Content type: Research
- Open Access
- Published: 07 August 2006
- Article: S13