Volume 10, issue 10, October 2009
22 articles in this issue
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The SR protein family
Authors
- Peter J Shepard
- Klemens J Hertel
- Content type: Protein family review
- Published: 27 October 2009
- Article: 242
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Runaway repeats force expansion of the Phytophthora infestans genome
Authors
- Mark Gijzen
- Content type: Minireview
- Published: 27 October 2009
- Article: 241
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Comparing cellular proteomes by mass spectrometry
Authors
- Florian Fröhlich
- Tobias C Walther
- Content type: Minireview
- Published: 28 October 2009
- Article: 240
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The dog days of autumn
Authors
- Gregory A Petsko
- Content type: Comment
- Published: 04 November 2009
- Article: 112
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ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads
Authors (first, second and last of 14)
- Iain MacCallum
- Dariusz Przybylski
- David B Jaffe
- Content type: Method
- Open Access
- Published: 01 October 2009
- Article: R103
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Molecular networks involved in mouse cerebral corticogenesis and spatio-temporal regulation of Sox4 and Sox11 novel antisense transcripts revealed by transcriptome profiling
Authors (first, second and last of 13)
- King-Hwa Ling
- Chelsee A Hewitt
- Hamish S Scott
- Content type: Research
- Open Access
- Published: 02 October 2009
- Article: R104
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MethMarker: user-friendly design and optimization of gene-specific DNA methylation assays
Authors (first, second and last of 5)
- Peter Schüffler
- Thomas Mikeska
- Christoph Bock
- Content type: Software
- Open Access
- Published: 05 October 2009
- Article: R105
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Draft genome sequence of the Daphnia pathogen Octosporea bayeri: insights into the gene content of a large microsporidian genome and a model for host-parasite interactions
Authors (first, second and last of 5)
- Nicolas Corradi
- Karen L Haag
- Patrick J Keeling
- Content type: Research
- Open Access
- Published: 06 October 2009
- Article: R106
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Defining the chromatin signature of inducible genes in T cells
Authors (first, second and last of 7)
- Pek S Lim
- Kristine Hardy
- Mary F Shannon
- Content type: Research
- Open Access
- Published: 06 October 2009
- Article: R107
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Genomic DNA k-mer spectra: models and modalities
Authors (first, second and last of 5)
- Benny Chor
- David Horn
- Tim Massingham
- Content type: Research
- Open Access
- Published: 08 October 2009
- Article: R108
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A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genomes
Authors
- Cizhong Jiang
- B Franklin Pugh
- Content type: Software
- Open Access
- Published: 08 October 2009
- Article: R109
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NeMeSys: a biological resource for narrowing the gap between sequence and function in the human pathogen Neisseria meningitidis
Authors (first, second and last of 11)
- Christophe Rusniok
- David Vallenet
- Vladimir Pelicic
- Content type: Research
- Open Access
- Published: 09 October 2009
- Article: R110
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Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplication
Authors (first, second and last of 19)
- Jeong-Hwan Mun
- Soo-Jin Kwon
- Beom-Seok Park
- Content type: Research
- Open Access
- Published: 12 October 2009
- Article: R111
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Deep short-read sequencing of chromosome 17 from the mouse strains A/J and CAST/Ei identifies significant germline variation and candidate genes that regulate liver triglyceride levels
Authors (first, second and last of 16)
- Ian Sudbery
- Jim Stalker
- David J Adams
- Content type: Method
- Open Access
- Published: 13 October 2009
- Article: R112
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Preferential binding of HIF-1 to transcriptionally active loci determines cell-type specific response to hypoxia
Authors
- Xiaobo Xia
- Andrew L Kung
- Content type: Research
- Open Access
- Published: 14 October 2009
- Article: R113
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Transcriptome analysis of functional differentiation between haploid and diploid cells of Emiliania huxleyi, a globally significant photosynthetic calcifying cell
Authors (first, second and last of 8)
- Peter von Dassow
- Hiroyuki Ogata
- Colomban de Vargas
- Content type: Research
- Open Access
- Published: 15 October 2009
- Article: R114
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Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts
Authors (first, second and last of 9)
- Joshua Z Levin
- Michael F Berger
- Andreas Gnirke
- Content type: Method
- Open Access
- Published: 16 October 2009
- Article: R115
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Enrichment of sequencing targets from the human genome by solution hybridization
Authors (first, second and last of 13)
- Ryan Tewhey
- Masakazu Nakano
- Kelly A Frazer
- Content type: Method
- Open Access
- Published: 16 October 2009
- Article: R116
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Simultaneous transcription of duplicated var2csa gene copies in individual Plasmodium falciparum parasites
Authors (first, second and last of 7)
- Kim JM Brolin
- Ulf Ribacke
- Qijun Chen
- Content type: Research
- Open Access
- Published: 22 October 2009
- Article: R117
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Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations
Authors (first, second and last of 7)
- Tom M Conrad
- Andrew R Joyce
- Bernhard Ø Palsson
- Content type: Research
- Open Access
- Published: 22 October 2009
- Article: R118
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An optimization framework for unsupervised identification of rare copy number variation from SNP array data
Authors (first, second and last of 5)
- Gökhan Yavaş
- Mehmet Koyutürk
- Thomas LaFramboise
- Content type: Method
- Open Access
- Published: 23 October 2009
- Article: R119