Volume 6, issue 1, December 2011
27 articles in this issue
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ViennaRNA Package 2.0
Authors (first, second and last of 7)
- Ronny Lorenz
- Stephan H Bernhart
- Ivo L Hofacker
- Content type: Software article
- Open Access
- Published: 24 November 2011
- Article: 26
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Comparative analysis of the quality of a global algorithm and a local algorithm for alignment of two sequences
Authors
- Valery O Polyanovsky
- Mikhail A Roytberg
- Vladimir G Tumanyan
- Content type: Research
- Open Access
- Published: 27 October 2011
- Article: 25
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Random generation of RNA secondary structures according to native distributions
Authors
- Markus E Nebel
- Anika Scheid
- Frank Weinberg
- Content type: Research
- Open Access
- Published: 12 October 2011
- Article: 24
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ReCoil - an algorithm for compression of extremely large datasets of dna data
Authors
- Vladimir Yanovsky
- Content type: Research
- Open Access
- Published: 11 October 2011
- Article: 23
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Multi-membership gene regulation in pathway based microarray analysis
Authors
- Stelios P Pavlidis
- Annette M Payne
- Stephen M Swift
- Content type: Research
- Open Access
- Published: 22 September 2011
- Article: 22
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Exploiting bounded signal flow for graph orientation based on cause–effect pairs
Authors (first, second and last of 5)
- Britta Dorn
- Falk Hüffner
- Johannes Uhlmann
- Content type: Research
- Open Access
- Published: 25 August 2011
- Article: 21
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Reducing the worst case running times of a family of RNA and CFG problems, using Valiant’s approach
Authors
- Shay Zakov
- Dekel Tsur
- Michal Ziv-Ukelson
- Content type: Research
- Open Access
- Published: 18 August 2011
- Article: 20
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Prediction of plant promoters based on hexamers and random triplet pair analysis
Authors (first, second and last of 4)
- AKM Azad
- Saima Shahid
- Hyunju Lee
- Content type: Research
- Open Access
- Published: 28 June 2011
- Article: 19
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DeBi: Discovering Differentially Expressed Biclusters using a Frequent Itemset Approach
Authors
- Akdes Serin
- Martin Vingron
- Content type: Research
- Open Access
- Published: 23 June 2011
- Article: 18
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A new, fast algorithm for detecting protein coevolution using maximum compatible cliques
Authors (first, second and last of 4)
- Alex Rodionov
- Alexandr Bezginov
- Elisabeth RM Tillier
- Content type: Research
- Open Access
- Published: 14 June 2011
- Article: 17
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Efficient unfolding pattern recognition in single molecule force spectroscopy data
Authors
- Bill Andreopoulos
- Dirk Labudde
- Content type: Research
- Open Access
- Published: 06 June 2011
- Article: 16
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A sub-cubic time algorithm for computing the quartet distance between two general trees
Authors (first, second and last of 4)
- Jesper Nielsen
- Anders K Kristensen
- Christian NS Pedersen
- Content type: Research
- Open Access
- Published: 03 June 2011
- Article: 15
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A robust approach based on Weibull distribution for clustering gene expression data
Authors (first, second and last of 6)
- Huakun Wang
- Zhenzhen Wang
- Ying Zhou
- Content type: Research
- Open Access
- Published: 31 May 2011
- Article: 14
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GRISOTTO: A greedy approach to improve combinatorial algorithms for motif discovery with prior knowledge
Authors
- Alexandra M Carvalho
- Arlindo L Oliveira
- Content type: Research
- Open Access
- Published: 22 April 2011
- Article: 13
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Sparse estimation for structural variability
Authors
- Raghavendra Hosur
- Rohit Singh
- Bonnie Berger
- Content type: Research
- Open Access
- Published: 19 April 2011
- Article: 12
This is part of 1 collection: -
Listing all sorting reversals in quadratic time
Authors
- Krister M Swenson
- Ghada Badr
- David Sankoff
- Content type: Research
- Open Access
- Published: 19 April 2011
- Article: 11
This is part of 1 collection: -
Haplotypes versus genotypes on pedigrees
Authors
- Bonnie B Kirkpatrick
- Content type: Research
- Open Access
- Published: 19 April 2011
- Article: 10
This is part of 1 collection: -
Estimation of alternative splicing isoform frequencies from RNA-Seq data
Authors (first, second and last of 4)
- Marius Nicolae
- Serghei Mangul
- Alex Zelikovsky
- Content type: Research
- Open Access
- Published: 19 April 2011
- Article: 9
This is part of 1 collection: -
An FPT haplotyping algorithm on pedigrees with a small number of sites
Authors
- Duong D Doan
- Patricia A Evans
- Content type: Research
- Open Access
- Published: 19 April 2011
- Article: 8
This is part of 1 collection: -
An experimental study of Quartets MaxCut and other supertree methods
Authors (first, second and last of 4)
- M Shel Swenson
- Rahul Suri
- Tandy Warnow
- Content type: Research
- Open Access
- Published: 19 April 2011
- Article: 7
This is part of 1 collection: -
WildSpan: mining structured motifs from protein sequences
Authors
- Chen-Ming Hsu
- Chien-Yu Chen
- Baw-Jhiune Liu
- Content type: Research
- Open Access
- Published: 31 March 2011
- Article: 6
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Efficient algorithms for the discovery of gapped factors
Authors
- Alberto Apostolico
- Cinzia Pizzi
- Esko Ukkonen
- Content type: Research
- Open Access
- Published: 23 March 2011
- Article: 5
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Fast local fragment chaining using sum-of-pair gap costs
Authors (first, second and last of 4)
- Christian Otto
- Steve Hoffmann
- Peter F Stadler
- Content type: Software article
- Open Access
- Published: 18 March 2011
- Article: 4
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RNA Accessibility in cubic time
Authors
- Stephan H Bernhart
- Ullrike Mückstein
- Ivo L Hofacker
- Content type: Research
- Open Access
- Published: 09 March 2011
- Article: 3
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WordCluster: detecting clusters of DNA words and genomic elements
Authors (first, second and last of 6)
- Michael Hackenberg
- Pedro Carpena
- José L Oliver
- Content type: Software article
- Open Access
- Published: 24 January 2011
- Article: 2
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Speeding up the Consensus Clustering methodology for microarray data analysis
Authors
- Raffaele Giancarlo
- Filippo Utro
- Content type: Research
- Open Access
- Published: 14 January 2011
- Article: 1