Volume 9, issue 1, December 2014
27 articles in this issue
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On the number of genomic pacemakers: a geometric approach
Authors
- Sagi Snir
- Content type: Research
- Open Access
- Published: 31 December 2014
- Article: 26
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Analysis of pattern overlaps and exact computation of P-values of pattern occurrences numbers: case of Hidden Markov Models
Authors (first, second and last of 4)
- Mireille Régnier
- Evgenia Furletova
- Mikhail Roytberg
- Content type: Research
- Open Access
- Published: 16 December 2014
- Article: 25
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A constraint solving approach to model reduction by tropical equilibration
Authors
- Sylvain Soliman
- François Fages
- Ovidiu Radulescu
- Content type: Research
- Open Access
- Published: 04 December 2014
- Article: 24
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Atom mapping with constraint programming
Authors (first, second and last of 6)
- Martin Mann
- Feras Nahar
- Christoph Flamm
- Content type: Research
- Open Access
- Published: 29 November 2014
- Article: 23
This is part of 1 collection: -
A priori assessment of data quality in molecular phylogenetics
Authors (first, second and last of 6)
- Bernhard Misof
- Karen Meusemann
- Peter F Stadler
- Content type: Review article
- Open Access
- Published: 12 September 2014
- Article: 22
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Optimal computation of all tandem repeats in a weighted sequence
Authors
- Carl Barton
- Costas S Iliopoulos
- Solon P Pissis
- Content type: Research
- Open Access
- Published: 16 August 2014
- Article: 21
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Using the message passing algorithm on discrete data to detect faults in boolean regulatory networks
Authors
- Anwoy Kumar Mohanty
- Aniruddha Datta
- Vijayanagaram Venkatraj
- Content type: Research
- Open Access
- Published: 16 August 2014
- Article: 20
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Graph-distance distribution of the Boltzmann ensemble of RNA secondary structures
Authors (first, second and last of 5)
- Jing Qin
- Markus Fricke
- Rolf Backofen
- Content type: Research
- Open Access
- Published: 11 September 2014
- Article: 19
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Not assessing the efficiency of multiple sequence alignment programs
Authors
- Andrew E Torda
- Content type: Commentary
- Open Access
- Published: 05 July 2014
- Article: 18
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RNA-RNA interaction prediction using genetic algorithm
Authors
- Soheila Montaseri
- Fatemeh Zare-Mirakabad
- Nasrollah Moghadam-Charkari
- Content type: Research
- Open Access
- Published: 29 June 2014
- Article: 17
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Enumerating all maximal frequent subtrees in collections of phylogenetic trees
Authors
- Akshay Deepak
- David Fernández-Baca
- Content type: Research
- Open Access
- Published: 18 June 2014
- Article: 16
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Computing the skewness of the phylogenetic mean pairwise distance in linear time
Authors
- Constantinos Tsirogiannis
- Brody Sandel
- Content type: Research
- Open Access
- Published: 14 June 2014
- Article: 15
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Identification of alternative topological domains in chromatin
Authors (first, second and last of 4)
- Darya Filippova
- Rob Patro
- Carl Kingsford
- Content type: Research
- Open Access
- Published: 03 May 2014
- Article: 14
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Characterizing compatibility and agreement of unrooted trees via cuts in graphs
Authors
- Sudheer Vakati
- David Fernández-Baca
- Content type: Research
- Open Access
- Published: 17 April 2014
- Article: 13
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MSARC: Multiple sequence alignment by residue clustering
Authors
- Michał Modzelewski
- Norbert Dojer
- Content type: Research
- Open Access
- Published: 16 April 2014
- Article: 12
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Mutual enrichment in ranked lists and the statistical assessment of position weight matrix motifs
Authors
- Limor Leibovich
- Zohar Yakhini
- Content type: Research
- Open Access
- Published: 05 April 2014
- Article: 11
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Predicting gene ontology annotations of orphan GWAS genes using protein-protein interactions
Authors (first, second and last of 5)
- Usha Kuppuswamy
- Seshan Ananthasubramanian
- Madhavi K Ganapathiraju
- Content type: Research
- Open Access
- Published: 03 April 2014
- Article: 10
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Fast algorithms for approximate circular string matching
Authors
- Carl Barton
- Costas S Iliopoulos
- Solon P Pissis
- Content type: Research
- Open Access
- Published: 22 March 2014
- Article: 9
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Protein (multi-)location prediction: using location inter-dependencies in a probabilistic framework
Authors
- Ramanuja Simha
- Hagit Shatkay
- Content type: Research
- Open Access
- Published: 19 March 2014
- Article: 8
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Simplified sequence-based method for ATP-binding prediction using contextual local evolutionary conservation
Authors
- Chun Fang
- Tamotsu Noguchi
- Hayato Yamana
- Content type: Research
- Open Access
- Published: 11 March 2014
- Article: 7
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Segmentor3IsBack: an R package for the fast and exact segmentation of Seq-data
Authors (first, second and last of 5)
- Alice Cleynen
- Michel Koskas
- Stéphane Robin
- Content type: Software article
- Open Access
- Published: 10 March 2014
- Article: 6
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Faster algorithms for RNA-folding using the Four-Russians method
Authors
- Balaji Venkatachalam
- Dan Gusfield
- Yelena Frid
- Content type: Research
- Open Access
- Published: 06 March 2014
- Article: 5
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Assessing the efficiency of multiple sequence alignment programs
Authors (first, second and last of 4)
- Fabiano Sviatopolk-Mirsky Pais
- PatrÃcia de Cássia Ruy
- Roney Santos Coimbra
- Content type: Research
- Open Access
- Published: 06 March 2014
- Article: 4
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Probabilistic approaches to alignment with tandem repeats
Authors
- Michal Nánási
- Tomáš Vinař
- Broňa Brejová
- Content type: Research
- Open Access
- Published: 01 March 2014
- Article: 3
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Using cascading Bloom filters to improve the memory usage for de Brujin graphs
Authors
- Kamil Salikhov
- Gustavo Sacomoto
- Gregory Kucherov
- Content type: Research
- Open Access
- Published: 24 February 2014
- Article: 2
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A minimum-labeling approach for reconstructing protein networks across multiple conditions
Authors (first, second and last of 4)
- Arnon Mazza
- Irit Gat-Viks
- Roded Sharan
- Content type: Research
- Open Access
- Published: 09 February 2014
- Article: 1