Volume 8, issue 1, December 2011
48 articles in this issue
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Modularity analysis based on predicted protein-protein interactions provides new insights into pathogenicity and cellular process of Escherichia coli O157:H7
Authors (first, second and last of 7)
- Xia Wang
- Junjie Yue
- Long Liang
- Content type: Research
- Open Access
- Published: 22 December 2011
- Article: 47
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Developing a multiscale, multi-resolution agent-based brain tumor model by graphics processing units
Authors (first, second and last of 7)
- Le Zhang
- Beini Jiang
- Xiaobo Zhou
- Content type: Research
- Open Access
- Published: 16 December 2011
- Article: 46
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A systems-based mathematical modelling framework for investigating the effect of drugs on solid tumours
Authors
- Cong Liu
- J Krishnan
- Xiao Yun Xu
- Content type: Research
- Open Access
- Published: 07 December 2011
- Article: 45
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The feasibility of age-specific travel restrictions during influenza pandemics
Authors (first, second and last of 6)
- Elson HY Lam
- Benjamin J Cowling
- Hiroshi Nishiura
- Content type: Research
- Open Access
- Published: 11 November 2011
- Article: 44
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A parametric method for cumulative incidence modeling with a new four-parameter log-logistic distribution
Authors
- Zahra Shayan
- SeyyedMohammadTaghi Ayatollahi
- Najaf Zare
- Content type: Research
- Open Access
- Published: 11 November 2011
- Article: 43
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Modelling ultrasound-induced mild hyperthermia of hyperplasia in vascular grafts
Authors (first, second and last of 5)
- Mark R Brinton
- Russell J Stewart
- Yan-Ting E Shiu
- Content type: Research
- Open Access
- Published: 03 November 2011
- Article: 42
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Protein-x of hepatitis B virus in interaction with CCAAT/enhancer-binding protein α (C/EBPα) - an in silico analysis approach
Authors (first, second and last of 7)
- Ashraf Mohamadkhani
- Parisa Shahnazari
- Hossein Poustchi
- Content type: Research
- Open Access
- Published: 28 October 2011
- Article: 41
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Time series analysis as input for clinical predictive modeling: Modeling cardiac arrest in a pediatric ICU
Authors
- Curtis E Kennedy
- James P Turley
- Content type: Research
- Open Access
- Published: 24 October 2011
- Article: 40
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Construction of gene regulatory networks using biclustering and bayesian networks
Authors
- Fadhl M Alakwaa
- Nahed H Solouma
- Yasser M Kadah
- Content type: Research
- Open Access
- Published: 22 October 2011
- Article: 39
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Availability of a pediatric trauma center in a disaster surge decreases triage time of the pediatric surge population: a population kinetics model
Authors (first, second and last of 6)
- Erik R Barthel
- James R Pierce
- Jeffrey S Upperman
- Content type: Research
- Open Access
- Published: 12 October 2011
- Article: 38
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Canalization effect in the coagulation cascade and the interindividual variability of oral anticoagulant response. a simulation Study
Authors
- Alexandru D Corlan
- John Ross
- Content type: Research
- Open Access
- Published: 12 October 2011
- Article: 37
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Modeling invasion of metastasizing cancer cells to bone marrow utilizing ecological principles
Authors
- Kun-Wan Chen
- Kenneth J Pienta
- Content type: Research
- Open Access
- Published: 03 October 2011
- Article: 36
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Relational grounding facilitates development of scientifically useful multiscale models
Authors (first, second and last of 4)
- C Anthony Hunt
- Glen EP Ropella
- Andrew D Gewitz
- Content type: Review
- Open Access
- Published: 27 September 2011
- Article: 35
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A network model for biofilm development in Escherichia coli K-12
Authors
- Andrew A Shalá
- Silvia Restrepo
- Andrés F González Barrios
- Content type: Research
- Open Access
- Published: 22 September 2011
- Article: 34
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Agent-based dynamic knowledge representation of Pseudomonas aeruginosa virulence activation in the stressed gut: Towards characterizing host-pathogen interactions in gut-derived sepsis
Authors (first, second and last of 4)
- John B Seal
- John C Alverdy
- Gary An
- Content type: Research
- Open Access
- Published: 19 September 2011
- Article: 33
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A reaction-diffusion model of the receptor-toxin-antibody interaction
Authors
- Vladas Skakauskas
- Pranas Katauskis
- Alex Skvortsov
- Content type: Research
- Open Access
- Published: 07 September 2011
- Article: 32
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Mathematical model insights into arsenic detoxification
Authors (first, second and last of 6)
- Sean D Lawley
- Molly Cinderella
- Michael C Reed
- Content type: Research
- Open Access
- Published: 26 August 2011
- Article: 31
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Cancer as a dynamical phase transition
Authors
- Paul CW Davies
- Lloyd Demetrius
- Jack A Tuszynski
- Content type: Research
- Open Access
- Published: 25 August 2011
- Article: 30
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Defining the buffering process by a triprotic acid without relying on stewart-electroneutrality considerations
Authors
- Minhtri K Nguyen
- Liyo Kao
- Ira Kurtz
- Content type: Research
- Open Access
- Published: 17 August 2011
- Article: 29
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Formation of translational risk score based on correlation coefficients as an alternative to Cox regression models for predicting outcome in patients with NSCLC
Authors (first, second and last of 6)
- Wolfgang Kössler
- Anette Fiebeler
- Uwe Klinge
- Content type: Research
- Open Access
- Published: 27 July 2011
- Article: 28
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Site-specific dose-response relationships for cancer induction from the combined Japanese A-bomb and Hodgkin cohorts for doses relevant to radiotherapy
Authors
- Uwe Schneider
- Marcin Sumila
- Judith Robotka
- Content type: Research
- Open Access
- Published: 26 July 2011
- Article: 27
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Proviral HIV-genome-wide and pol-gene specific Zinc Finger Nucleases: Usability for targeted HIV gene therapy
Authors
- Misaki Wayengera
- Content type: Research
- Open Access
- Published: 22 July 2011
- Article: 26
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Optimizing automated characterization of liver fibrosis histological images by investigating color spaces at different resolutions
Authors
- Doaa Mahmoud-Ghoneim
- Content type: Research
- Open Access
- Published: 14 July 2011
- Article: 25
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A biochemical hypothesis on the formation of fingerprints using a turing patterns approach
Authors
- Diego A Garzón-Alvarado
- Angelica M RamÃrez Martinez
- Content type: Research
- Open Access
- Published: 28 June 2011
- Article: 24
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Identity of zinc finger nucleases with specificity to herpes simplex virus type II genomic DNA: novel HSV-2 vaccine/therapy precursors
Authors
- Misaki Wayengera
- Content type: Research
- Open Access
- Published: 24 June 2011
- Article: 23
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A nucleotide binding rectification Brownian ratchet model for translocation of Y-family DNA polymerases
Authors
- Ping Xie
- Content type: Research
- Open Access
- Published: 24 June 2011
- Article: 22
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Review and application of group theory to molecular systems biology
Authors
- Edward A Rietman
- Robert L Karp
- Jack A Tuszynski
- Content type: Review
- Open Access
- Published: 22 June 2011
- Article: 21
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A local glucose-and oxygen concentration-based insulin secretion model for pancreatic islets
Authors
- Peter Buchwald
- Content type: Research
- Open Access
- Published: 21 June 2011
- Article: 20
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Interactomes, manufacturomes and relational biology: analogies between systems biology and manufacturing systems
Authors
- Edward A Rietman
- John Z Colt
- Jack A Tuszynski
- Content type: Research
- Open Access
- Published: 20 June 2011
- Article: 19
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The function of 7D-cadherins: a mathematical model predicts physiological importance for water transport through simple epithelia
Authors (first, second and last of 4)
- Mareike Ahl
- Agnes Weth
- Werner Baumgartner
- Content type: Research
- Open Access
- Published: 10 June 2011
- Article: 18
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Self-organization of developing embryo using scale-invariant approach
Authors
- Ali Tiraihi
- Mujtaba Tiraihi
- Taki Tiraihi
- Content type: Research
- Open Access
- Published: 03 June 2011
- Article: 17
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Donnan effect on chloride ion distribution as a determinant of body fluid composition that allows action potentials to spread via fast sodium channels
Authors
- Sven Kurbel
- Content type: Review
- Open Access
- Published: 30 May 2011
- Article: 16
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Can molecular cell biology explain chromosome motions?
Authors
- Daniel H Shain
- L John Gagliardi
- Content type: Commentary
- Open Access
- Published: 27 May 2011
- Article: 15
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Modeling left ventricular diastolic dysfunction: classification and key indicators
Authors (first, second and last of 5)
- Chuan Luo
- Deepa Ramachandran
- John W Clark Jr
- Content type: Research
- Open Access
- Published: 09 May 2011
- Article: 14
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Insights gained from the reverse engineering of gene networks in keloid fibroblasts
Authors
- Brandon NS Ooi
- Toan Thang Phan
- Content type: Research
- Open Access
- Published: 02 May 2011
- Article: 13
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A simple intravenous glucose tolerance test for assessment of insulin sensitivity
Authors (first, second and last of 4)
- Robert G Hahn
- Stefan Ljunggren
- Thomas Nyström
- Content type: Research
- Open Access
- Published: 02 May 2011
- Article: 12
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Improving the prediction of yeast protein function using weighted protein-protein interactions
Authors
- Khaled S Ahmed
- Nahed H Saloma
- Yasser M Kadah
- Content type: Research
- Open Access
- Published: 27 April 2011
- Article: 11
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Safe uses of Hill's model: an exact comparison with the Adair-Klotz model
Authors
- Zoran Konkoli
- Content type: Research
- Open Access
- Published: 26 April 2011
- Article: 10
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The effects of low-impact mutations in digital organisms
Authors
- Chase W Nelson
- John C Sanford
- Content type: Research
- Open Access
- Published: 18 April 2011
- Article: 9
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A mathematical model of quorum sensing regulated EPS production in biofilm communities
Authors (first, second and last of 4)
- Mallory R Frederick
- Christina Kuttler
- Hermann J Eberl
- Content type: Research
- Open Access
- Published: 10 April 2011
- Article: 8
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Proof-of-principle investigation of an algorithmic model of adenosine-mediated angiogenesis
Authors (first, second and last of 5)
- Francisco Azuaje
- Frédérique Léonard
- Daniel R Wagner
- Content type: Research
- Open Access
- Published: 08 April 2011
- Article: 7
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Module-based multiscale simulation of angiogenesis in skeletal muscle
Authors (first, second and last of 5)
- Gang Liu
- Amina A Qutub
- Aleksander S Popel
- Content type: Research
- Open Access
- Published: 04 April 2011
- Article: 6
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Disruption of cell wall fatty acid biosynthesis in Mycobacterium tuberculosis using a graph theoretic approach
Authors
- Veeky Baths
- Utpal Roy
- Tarkeshwar Singh
- Content type: Research
- Open Access
- Published: 31 March 2011
- Article: 5
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The self-organizing fractal theory as a universal discovery method: the phenomenon of life
Authors
- Alexei Kurakin
- Content type: Research
- Open Access
- Published: 29 March 2011
- Article: 4
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Maximum likelihood estimation of reviewers' acumen in central review setting: categorical data
Authors (first, second and last of 5)
- Wei Zhao
- James M Boyett
- Yanan Wu
- Content type: Research
- Open Access
- Published: 25 March 2011
- Article: 3
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Theoretical basis to measure the impact of short-lasting control of an infectious disease on the epidemic peak
Authors
- Ryosuke Omori
- Hiroshi Nishiura
- Content type: Research
- Open Access
- Published: 26 January 2011
- Article: 2
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Using an agent-based model to analyze the dynamic communication network of the immune response
Authors (first, second and last of 9)
- Virginia A Folcik
- Gordon Broderick
- Clay B Marsh
- Content type: Software
- Open Access
- Published: 19 January 2011
- Article: 1