Volume 2, issue 1, December 2009
72 articles in this issue
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Gene expression profiling supports the hypothesis that human ovarian surface epithelia are multipotent and capable of serving as ovarian cancer initiating cells
Authors (first, second and last of 7)
- Nathan J Bowen
- L DeEtte Walker
- John F McDonald
- Content type: Research article
- Open Access
- Published: 29 December 2009
- Article: 71
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Identifying significant genetic regulatory networks in the prostate cancer from microarray data based on transcription factor analysis and conditional independency
Authors (first, second and last of 6)
- Hsiang-Yuan Yeh
- Shih-Wu Cheng
- Von-Wun Soo
- Content type: Research article
- Open Access
- Published: 21 December 2009
- Article: 70
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A taxonomy of epithelial human cancer and their metastases
Authors (first, second and last of 4)
- Olivier Gevaert
- Anneleen Daemen
- Louis Libbrecht
- Content type: Research article
- Open Access
- Published: 17 December 2009
- Article: 69
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A transcriptomic computational analysis of mastic oil-treated Lewis lung carcinomas reveals molecular mechanisms targeting tumor cell growth and survival
Authors (first, second and last of 6)
- Panagiotis Moulos
- Olga Papadodima
- Fragiskos N Kolisis
- Content type: Research article
- Open Access
- Published: 15 December 2009
- Article: 68
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DNA microarray profiling of genes differentially regulated by the histone deacetylase inhibitors vorinostat and LBH589 in colon cancer cell lines
Authors (first, second and last of 6)
- Melissa J LaBonte
- Peter M Wilson
- Robert D Ladner
- Content type: Research article
- Open Access
- Published: 30 November 2009
- Article: 67
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A metadata approach for clinical data management in translational genomics studies in breast cancer
Authors (first, second and last of 8)
- Irene Papatheodorou
- Charles Crichton
- Carlos Caldas
- Content type: Technical advance
- Open Access
- Published: 30 November 2009
- Article: 66
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Gene expression profiling in sinonasal adenocarcinoma
Authors (first, second and last of 10)
- Dominique Tripodi
- Sylvia Quéméner
- Catherine Gratas-Rabbia-Ré
- Content type: Research article
- Open Access
- Published: 10 November 2009
- Article: 65
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Accurate molecular classification of cancer using simple rules
Authors
- Xiaosheng Wang
- Osamu Gotoh
- Content type: Research article
- Open Access
- Published: 30 October 2009
- Article: 64
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Early over expression of messenger RNA for multiple genes, including insulin, in the Pancreatic Lymph Nodes of NOD mice is associated with Islet Autoimmunity
Authors (first, second and last of 5)
- Béatrice Regnault
- José Osorio y Fortea
- Evie Melanitou
- Content type: Research article
- Open Access
- Published: 02 October 2009
- Article: 63
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Exon expression in lymphoblastoid cell lines from subjects with schizophrenia before and after glucose deprivation
Authors (first, second and last of 16)
- Maureen V Martin
- Brandi Rollins
- Marquis P Vawter
- Content type: Research article
- Open Access
- Published: 22 September 2009
- Article: 62
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Discovering cancer genes by integrating network and functional properties
Authors (first, second and last of 6)
- Li Li
- Kangyu Zhang
- Zhijun Tang
- Content type: Research article
- Open Access
- Published: 19 September 2009
- Article: 61
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Transcriptional profiling differences for articular cartilage and repair tissue in equine joint surface lesions
Authors (first, second and last of 7)
- Michael J Mienaltowski
- Liping Huang
- James N MacLeod
- Content type: Research article
- Open Access
- Published: 14 September 2009
- Article: 60
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Gene expression meta-analysis supports existence of molecular apocrine breast cancer with a role for androgen receptor and implies interactions with ErbB family
Authors (first, second and last of 4)
- Sandeep Sanga
- Bradley M Broom
- Mary E Edgerton
- Content type: Research article
- Open Access
- Published: 11 September 2009
- Article: 59
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Glucocorticoids with different chemical structures but similar glucocorticoid receptor potency regulate subsets of common and unique genes in human trabecular meshwork cells
Authors (first, second and last of 4)
- Alissar Nehmé
- Edward K Lobenhofer
- Jeffrey L Edelman
- Content type: Research article
- Open Access
- Published: 10 September 2009
- Article: 58
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Evaluation of a new high-dimensional miRNA profiling platform
Authors (first, second and last of 16)
- Julie M Cunningham
- Ann L Oberg
- Stephen N Thibodeau
- Content type: Research article
- Open Access
- Published: 27 August 2009
- Article: 57
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Induction of the interleukin 6/ signal transducer and activator of transcription pathway in the lungs of mice sub-chronically exposed to mainstream tobacco smoke
Authors (first, second and last of 5)
- Sabina Halappanavar
- Marsha Russell
- Carole L Yauk
- Content type: Research article
- Open Access
- Published: 21 August 2009
- Article: 56
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Anti-oncogenic and pro-differentiation effects of clorgyline, a monoamine oxidase A inhibitor, on high grade prostate cancer cells
Authors
- Hongjuan Zhao
- Vincent Flamand
- Donna M Peehl
- Content type: Research article
- Open Access
- Published: 20 August 2009
- Article: 55
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MicroRNA-125a is over-expressed in insulin target tissues in a spontaneous rat model of Type 2 Diabetes
Authors (first, second and last of 12)
- Blanca M Herrera
- Helen E Lockstone
- Cecilia M Lindgren
- Content type: Research article
- Open Access
- Published: 18 August 2009
- Article: 54
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Verification of genes differentially expressed in neuroblastoma tumours: a study of potential tumour suppressor genes
Authors (first, second and last of 7)
- Kaisa Thorell
- Annika Bergman
- Frida Abel
- Content type: Research article
- Open Access
- Published: 17 August 2009
- Article: 53
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A gene expression profile for detection of sufficient tumour cells in breast tumour tissue: microarray diagnosis eligibility
Authors (first, second and last of 6)
- Paul Roepman
- Arenda Schuurman
- Annuska M Glas
- Content type: Research article
- Open Access
- Published: 12 August 2009
- Article: 52
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Hepatic inflammation mediated by hepatitis C virus core protein is ameliorated by blocking complement activation
Authors (first, second and last of 6)
- Ming-Ling Chang
- Chau-Ting Yeh
- D Montgomery Bissell
- Content type: Research article
- Open Access
- Published: 08 August 2009
- Article: 51
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Integrated microarray and multiplex cytokine analyses of Kaposi's Sarcoma Associated Herpesvirus viral FLICE Inhibitory Protein K13 affected genes and cytokines in human blood vascular endothelial cells
Authors (first, second and last of 4)
- Vasu Punj
- Hittu Matta
- Preet M Chaudhary
- Content type: Research article
- Open Access
- Published: 06 August 2009
- Article: 50
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Identification and validation of suitable endogenous reference genes for gene expression studies in human peripheral blood
Authors (first, second and last of 15)
- Boryana S Stamova
- Michelle Apperson
- Frank R Sharp
- Content type: Research article
- Open Access
- Published: 05 August 2009
- Article: 49
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Candidate pathways and genes for prostate cancer: a meta-analysis of gene expression data
Authors (first, second and last of 6)
- Ivan P Gorlov
- Jinyoung Byun
- Christopher J Logothetis
- Content type: Research article
- Open Access
- Published: 04 August 2009
- Article: 48
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Host sequence motifs shared by HIV predict response to antiretroviral therapy
Authors (first, second and last of 4)
- William Dampier
- Perry Evans
- Aydin Tozeren
- Content type: Research article
- Open Access
- Published: 23 July 2009
- Article: 47
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Prediction of acute multiple sclerosis relapses by transcription levels of peripheral blood cells
Authors (first, second and last of 5)
- Michael Gurevich
- Tamir Tuller
- Anat Achiron
- Content type: Research article
- Open Access
- Published: 22 July 2009
- Article: 46
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An assessment of the portability of ancestry informative markers between human populations
Authors
- Sean Myles
- Mark Stoneking
- Nic Timpson
- Content type: Research article
- Open Access
- Published: 20 July 2009
- Article: 45
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Novel transcriptional profile in wrist muscles from cerebral palsy patients
Authors (first, second and last of 7)
- Lucas R Smith
- Eva Pontén
- Richard L Lieber
- Content type: Research article
- Open Access
- Published: 14 July 2009
- Article: 44
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Finding exclusively deleted or amplified genomic areas in lung adenocarcinomas using a novel chromosomal pattern analysis
Authors (first, second and last of 5)
- Philippe Broët
- Patrick Tan
- Sylvia Richardson
- Content type: Research article
- Open Access
- Published: 14 July 2009
- Article: 43
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Genomic profiling distinguishes familial multiple and sporadic multiple meningiomas
Authors (first, second and last of 11)
- Yiping Shen
- Fabio Nunes
- James F Gusella
- Content type: Research article
- Open Access
- Published: 09 July 2009
- Article: 42
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Functional annotations of diabetes nephropathy susceptibility loci through analysis of genome-wide renal gene expression in rat models of diabetes mellitus
Authors (first, second and last of 18)
- Yaomin Hu
- Pamela J Kaisaki
- Dominique Gauguier
- Content type: Research article
- Open Access
- Published: 09 July 2009
- Article: 41
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The Gene expression Grade Index: a potential predictor of relapse for endocrine-treated breast cancer patients in the BIG 1–98 trial
Authors (first, second and last of 12)
- Christine Desmedt
- Anita Giobbie-Hurder
- Christos Sotiriou
- Content type: Research article
- Open Access
- Published: 02 July 2009
- Article: 40
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NMD inhibition fails to identify tumour suppressor genes in microsatellite stable gastric cancer cell lines
Authors (first, second and last of 8)
- Tineke E Buffart
- Marianne Tijssen
- Beatriz Carvalho
- Content type: Research article
- Open Access
- Published: 29 June 2009
- Article: 39
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A gene signature for post-infectious chronic fatigue syndrome
Authors (first, second and last of 6)
- John W Gow
- Suzanne Hagan
- Abhijit Chaudhuri
- Content type: Research article
- Open Access
- Published: 25 June 2009
- Article: 38
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Gene expression profiling identifies activated growth factor signaling in poor prognosis (Luminal-B) estrogen receptor positive breast cancer
Authors (first, second and last of 8)
- Sherene Loi
- Christos Sotiriou
- Grant A McArthur
- Content type: Research article
- Open Access
- Published: 24 June 2009
- Article: 37
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MLL rearrangements in pediatric acute lymphoblastic and myeloblastic leukemias: MLL specific and lineage specific signatures
Authors (first, second and last of 4)
- Andrea Zangrando
- Marta Campo Dell'Orto
- Giuseppe Basso
- Content type: Research article
- Open Access
- Published: 23 June 2009
- Article: 36
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Identification and analysis of miRNAs in human breast cancer and teratoma samples using deep sequencing
Authors (first, second and last of 10)
- Sanne Nygaard
- Anders Jacobsen
- Thomas Litman
- Content type: Research article
- Open Access
- Published: 09 June 2009
- Article: 35
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Integrated analysis of DNA methylation and gene expression reveals specific signaling pathways associated with platinum resistance in ovarian cancer
Authors (first, second and last of 9)
- Meng Li
- Curt Balch
- Kenneth P Nephew
- Content type: Research article
- Open Access
- Published: 08 June 2009
- Article: 34
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A longitudinal study of gene expression in healthy individuals
Authors (first, second and last of 11)
- Chris Karlovich
- Guillemette Duchateau-Nguyen
- John P Caulfield
- Content type: Research article
- Open Access
- Published: 07 June 2009
- Article: 33
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Genomic profiling identifies common HPV-associated chromosomal alterations in squamous cell carcinomas of cervix and head and neck
Authors (first, second and last of 12)
- Saskia M Wilting
- Serge J Smeets
- Renske DM Steenbergen
- Content type: Research article
- Open Access
- Published: 01 June 2009
- Article: 32
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Identification of gene co-regulatory modules and associated cis-elements involved in degenerative heart disease
Authors
- Charles G Danko
- Arkady M Pertsov
- Content type: Research article
- Open Access
- Published: 28 May 2009
- Article: 31
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Hypermethylation of genomic 3.3-kb repeats is frequent event in HPV-positive cervical cancer
Authors (first, second and last of 4)
- Alexey N Katargin
- Larissa S Pavlova
- Natalia P Kisseljova
- Content type: Research article
- Open Access
- Published: 27 May 2009
- Article: 30
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The A's, G's, C's, and T's of health disparities
Authors
- Edward Ramos
- Charles Rotimi
- Content type: Commentary
- Open Access
- Published: 22 May 2009
- Article: 29
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Gene expression in the prefrontal cortex during adolescence: implications for the onset of schizophrenia
Authors (first, second and last of 6)
- Laura W Harris
- Helen E Lockstone
- Sabine Bahn
- Content type: Research article
- Open Access
- Published: 20 May 2009
- Article: 28
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Prediction of HIV-1 virus-host protein interactions using virus and host sequence motifs
Authors (first, second and last of 4)
- Perry Evans
- William Dampier
- Aydin Tozeren
- Content type: Research article
- Open Access
- Published: 18 May 2009
- Article: 27
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Data integration from two microarray platforms identifies bi-allelic genetic inactivation of RIC8Ain a breast cancer cell line
Authors (first, second and last of 8)
- Aslaug Aamodt Muggerud
- Henrik Edgren
- Olli Kallioniemi
- Content type: Research article
- Open Access
- Published: 11 May 2009
- Article: 26
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Similar gene expression profiles of sporadic, PGL2-, and SDHD-linked paragangliomas suggest a common pathway to tumorigenesis
Authors (first, second and last of 8)
- Erik F Hensen
- Jelle J Goeman
- Cees J Cornelisse
- Content type: Research article
- Open Access
- Published: 11 May 2009
- Article: 25
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Network analysis of human glaucomatous optic nerve head astrocytes
Authors (first, second and last of 13)
- Tatiana Nikolskaya
- Yuri Nikolsky
- Valery I Shestopalov
- Content type: Research article
- Open Access
- Published: 09 May 2009
- Article: 24
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Microarray analysis of RNA extracted from formalin-fixed, paraffin-embedded and matched fresh-frozen ovarian adenocarcinomas
Authors (first, second and last of 4)
- Grazyna Fedorowicz
- Steve Guerrero
- Zora Modrusan
- Content type: Research article
- Open Access
- Published: 08 May 2009
- Article: 23