Volume 7, issue 1, December 2007
84 articles in this issue
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Crystallographic characterization of two novel crystal forms of human insulin induced by chaotropic agents and a shift in pH
Authors
- Mathias Norrman
- Gerd Schluckebier
- Content type: Research article
- Open Access
- Published: 19 December 2007
- Article: 83
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Characterization of a human coagulation factor Xa-binding site on Viperidae snake venom phospholipases A2 by affinity binding studies and molecular bioinformatics
Authors
- Grazyna Faure
- Veerabasappa T Gowda
- Rachid C Maroun
- Content type: Research article
- Open Access
- Published: 06 December 2007
- Article: 82
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NMR and X-ray analysis of structural additivity in metal binding site-swapped hybrids of rubredoxin
Authors (first, second and last of 6)
- David M LeMaster
- Janet S Anderson
- Griselda Hernández
- Content type: Research article
- Open Access
- Published: 05 December 2007
- Article: 81
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Structural analysis of the carboxy terminal PH domain of pleckstrin bound to D-myo-inositol 1,2,3,5,6-pentakisphosphate
Authors (first, second and last of 4)
- Sean G Jackson
- Yi Zhang
- Murray S Junop
- Content type: Research article
- Open Access
- Published: 22 November 2007
- Article: 80
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Neutral evolution of Protein-protein interactions: a computational study using simple models
Authors
- Josselin Noirel
- Thomas Simonson
- Content type: Research article
- Open Access
- Published: 19 November 2007
- Article: 79
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A comprehensive analysis of non-sequential alignments between all protein structures
Authors
- Alexej Abyzov
- Valentin A Ilyin
- Content type: Research article
- Open Access
- Published: 16 November 2007
- Article: 78
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Using molecular principal axes for structural comparison: determining the tertiary changes of a FAB antibody domain induced by antigenic binding
Authors
- B David Silverman
- Content type: Research article
- Open Access
- Published: 09 November 2007
- Article: 77
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Global dynamics of newly constructed oligonucleosomes of conventional and variant H2A.Z histone
Authors
- Amutha Ramaswamy
- Ilya Ioshikhes
- Content type: Research article
- Open Access
- Published: 08 November 2007
- Article: 76
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Self-assembly of human latexin into amyloid-like oligomers
Authors (first, second and last of 5)
- Irantzu Pallarés
- Clara Berenguer
- Salvador Ventura
- Content type: Research article
- Open Access
- Published: 08 November 2007
- Article: 75
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NMR spectroscopic and analytical ultracentrifuge analysis of membrane protein detergent complexes
Authors (first, second and last of 6)
- Innokentiy Maslennikov
- Georgia Kefala
- Witek Kwiatkowski
- Content type: Methodology article
- Open Access
- Published: 08 November 2007
- Article: 74
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Molecular dynamics simulation of human LOX-1 provides an explanation for the lack of OxLDL binding to the Trp150Ala mutant
Authors (first, second and last of 4)
- Mattia Falconi
- Silvia Biocca
- Alessandro Desideri
- Content type: Research article
- Open Access
- Published: 07 November 2007
- Article: 73
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Fragment-based identification of determinants of conformational and spectroscopic change at the ricin active site
Authors (first, second and last of 6)
- John H Carra
- Colleen A McHugh
- Charles B Millard
- Content type: Research article
- Open Access
- Published: 06 November 2007
- Article: 72
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The structure of mollusc larval shells formed in the presence of the chitin synthase inhibitor Nikkomycin Z
Authors
- Veronika Schönitzer
- Ingrid M Weiss
- Content type: Research article
- Open Access
- Published: 06 November 2007
- Article: 71
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Structure of Arabidopsis thaliana 5-methylthioribose kinase reveals a more occluded active site than its bacterial homolog
Authors
- Shao-Yang Ku
- Kenneth A Cornell
- P Lynne Howell
- Content type: Research article
- Open Access
- Published: 25 October 2007
- Article: 70
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Crystal structures of Leptospira interrogans FAD-containing ferredoxin-NADP+ reductase and its complex with NADP+
Authors (first, second and last of 7)
- Alessandro S Nascimento
- Daniela L Catalano-Dupuy
- Igor Polikarpov
- Content type: Research article
- Open Access
- Published: 24 October 2007
- Article: 69
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The structure of Mycobacteria 2C-methyl-D-erythritol-2,4-cyclodiphosphate synthase, an essential enzyme, provides a platform for drug discovery
Authors (first, second and last of 4)
- Lori Buetow
- Amanda C Brown
- William N Hunter
- Content type: Research article
- Open Access
- Published: 23 October 2007
- Article: 68
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Glutathione mediated regulation of oligomeric structure and functional activity of Plasmodium falciparum glutathione S-transferase
Authors (first, second and last of 4)
- Timir Tripathi
- Stefan Rahlfs
- Vinod Bhakuni
- Content type: Research article
- Open Access
- Published: 17 October 2007
- Article: 67
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The binding site for neohesperidin dihydrochalcone at the human sweet taste receptor
Authors (first, second and last of 5)
- Marcel Winnig
- Bernd Bufe
- Wolfgang Meyerhof
- Content type: Research article
- Open Access
- Published: 12 October 2007
- Article: 66
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Structural disorder promotes assembly of protein complexes
Authors
- Hedi Hegyi
- Eva Schad
- Peter Tompa
- Content type: Research article
- Open Access
- Published: 08 October 2007
- Article: 65
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Antibody-protein interactions: benchmark datasets and prediction tools evaluation
Authors
- Julia V Ponomarenko
- Philip E Bourne
- Content type: Research article
- Open Access
- Published: 02 October 2007
- Article: 64
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Metal ion-dependent, reversible, protein filament formation by designed beta-roll polypeptides
Authors (first, second and last of 10)
- Andrew J Scotter
- Meng Guo
- Peter L Davies
- Content type: Research article
- Open Access
- Published: 01 October 2007
- Article: 63
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X-ray structures of two proteins belonging to Pfam DUF178 revealed unexpected structural similarity to the DUF191 Pfam family
Authors
- Rajiv Tyagi
- Stephen K Burley
- Subramanyam Swaminathan
- Content type: Research article
- Open Access
- Published: 01 October 2007
- Article: 62
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Identification of DNA-binding protein target sequences by physical effective energy functions: free energy analysis of lambda repressor-DNA complexes.
Authors
- Elisabetta Moroni
- Michele Caselle
- Federico Fogolari
- Content type: Research article
- Open Access
- Published: 27 September 2007
- Article: 61
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Crystal structure of a blue laccase from Lentinus tigrinus: evidences for intermediates in the molecular oxygen reductive splitting by multicopper oxidases
Authors (first, second and last of 7)
- Marta Ferraroni
- Nina M Myasoedova
- Fabrizio Briganti
- Content type: Research article
- Open Access
- Published: 26 September 2007
- Article: 60
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Crystal structure of Leishmania tarentolae hypoxanthine-guanine phosphoribosyltransferase
Authors (first, second and last of 4)
- Paulo S Monzani
- Stefano Trapani
- Glaucius Oliva
- Content type: Research article
- Open Access
- Published: 25 September 2007
- Article: 59
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Grb7 SH2 domain structure and interactions with a cyclic peptide inhibitor of cancer cell migration and proliferation
Authors (first, second and last of 10)
- Corrine J Porter
- Jacqueline M Matthews
- Jacqueline A Wilce
- Content type: Research article
- Open Access
- Published: 25 September 2007
- Article: 58
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Solution structure of the second bromodomain of Brd2 and its specific interaction with acetylated histone tails
Authors (first, second and last of 7)
- Hongda Huang
- Jiahai Zhang
- Yunyu Shi
- Content type: Research article
- Open Access
- Published: 12 September 2007
- Article: 57
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Spectrum of disease-causing mutations in protein secondary structures
Authors
- Sofia Khan
- Mauno Vihinen
- Content type: Research article
- Open Access
- Published: 29 August 2007
- Article: 56
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Dimerization of inositol monophosphatase Mycobacterium tuberculosis SuhB is not constitutive, but induced by binding of the activator Mg2+
Authors (first, second and last of 8)
- Alistair K Brown
- Guoyu Meng
- Klaus Fütterer
- Content type: Research article
- Open Access
- Published: 28 August 2007
- Article: 55
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Computational modeling of protein mutant stability: analysis and optimization of statistical potentials and structural features reveal insights into prediction model development
Authors (first, second and last of 4)
- Vijaya Parthiban
- M Michael Gromiha
- Dietmar Schomburg
- Content type: Research article
- Open Access
- Published: 16 August 2007
- Article: 54
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Structural footprinting in protein structure comparison: the impact of structural fragments
Authors (first, second and last of 5)
- Elena Zotenko
- Rezarta Islamaj Dogan
- Teresa M Przytycka
- Content type: Research article
- Open Access
- Published: 09 August 2007
- Article: 53
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Structure of a lectin from Canavalia gladiata seeds: new structural insights for old molecules
Authors (first, second and last of 11)
- PlÃnio Delatorre
- Bruno AM Rocha
- Benildo S Cavada
- Content type: Research article
- Open Access
- Published: 02 August 2007
- Article: 52
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Observation of glycine zipper and unanticipated occurrence of ambidextrous helices in the crystal structure of a chiral undecapeptide
Authors (first, second and last of 5)
- Rudresh Acharya
- Madhvi Gupta
- Virander S Chauhan
- Content type: Research article
- Open Access
- Published: 01 August 2007
- Article: 51
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Comparative Analysis of Protein Structure Alignments
Authors
- Gabriele Mayr
- Francisco S Domingues
- Peter Lackner
- Content type: Research article
- Open Access
- Published: 26 July 2007
- Article: 50
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Search for allosteric disulfide bonds in NMR structures
Authors
- Bryan Schmidt
- Philip J Hogg
- Content type: Research article
- Open Access
- Published: 20 July 2007
- Article: 49
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Type II restriction endonuclease R.Eco29kI is a member of the GIY-YIG nuclease superfamily
Authors (first, second and last of 12)
- Elena M Ibryashkina
- Marina V Zakharova
- Janusz M Bujnicki
- Content type: Research article
- Open Access
- Published: 12 July 2007
- Article: 48
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Crystal structure of hyperthermophilic esterase EstE1 and the relationship between its dimerization and thermostability properties
Authors (first, second and last of 8)
- Jung-Sue Byun
- Jin-Kyu Rhee
- Hyun-Soo Cho
- Content type: Research article
- Open Access
- Published: 12 July 2007
- Article: 47
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(NZ)CH...O Contacts assist crystallization of a ParB-like nuclease
Authors (first, second and last of 11)
- Neil Shaw
- Chongyun Cheng
- Zhi-Jie Liu
- Content type: Methodology article
- Open Access
- Published: 07 July 2007
- Article: 46
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Crystal structure of vaccinia virus uracil-DNA glycosylase reveals dimeric assembly
Authors (first, second and last of 6)
- Norbert Schormann
- Alexei Grigorian
- Debasish Chattopadhyay
- Content type: Research article
- Open Access
- Published: 02 July 2007
- Article: 45
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The role of hydrophobic interactions in positioning of peripheral proteins in membranes
Authors (first, second and last of 4)
- Andrei L Lomize
- Irina D Pogozheva
- Henry I Mosberg
- Content type: Research article
- Open Access
- Published: 29 June 2007
- Article: 44
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Towards the high-resolution protein structure prediction. Fast refinement of reduced models with all-atom force field
Authors
- Sebastian Kmiecik
- Dominik Gront
- Andrzej Kolinski
- Content type: Research article
- Open Access
- Published: 29 June 2007
- Article: 43
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X-ray structures of Na-GST-1 and Na-GST-2 two glutathione s-transferase from the human hookworm Necator americanus
Authors (first, second and last of 9)
- Oluwatoyin A Asojo
- Kohei Homma
- Peter J Hotez
- Content type: Research article
- Open Access
- Published: 26 June 2007
- Article: 42
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Differential scanning calorimetry study of glycerinated rabbit psoas muscle fibres in intermediate state of ATP hydrolysis
Authors (first, second and last of 5)
- Timea Dergez
- Dénes Lőrinczy
- Joseph Belagyi
- Content type: Research article
- Open Access
- Published: 24 June 2007
- Article: 41
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Realm of PD-(D/E)XK nuclease superfamily revisited: detection of novel families with modified transitive meta profile searches
Authors (first, second and last of 5)
- Lukasz Knizewski
- Lisa N Kinch
- Krzysztof Ginalski
- Content type: Research article
- Open Access
- Published: 20 June 2007
- Article: 40
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Cation induced differential effect on structural and functional properties of Mycobacterium tuberculosis α-Isopropylmalate synthase
Authors
- Kulwant Singh
- Vinod Bhakuni
- Content type: Research article
- Open Access
- Published: 19 June 2007
- Article: 39
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Crystal structure of Saccharomyces cerevisiae 6-phosphogluconate dehydrogenase Gnd1
Authors (first, second and last of 4)
- Weiwei He
- Yi Wang
- Cong-Zhao Zhou
- Content type: Research article
- Open Access
- Published: 14 June 2007
- Article: 38
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In silico screening of mutational effects on enzyme-proteic inhibitor affinity: a docking-based approach
Authors
- Daniele Dell'Orco
- Pier Giuseppe De Benedetti
- Francesca Fanelli
- Content type: Research article
- Open Access
- Published: 08 June 2007
- Article: 37
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Engineering of PA-IIL lectin from Pseudomonas aeruginosa – Unravelling the role of the specificity loop for sugar preference
Authors (first, second and last of 6)
- Jan Adam
- Martina Pokorná
- Michaela Wimmerová
- Content type: Research article
- Open Access
- Published: 01 June 2007
- Article: 36
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High resolution crystal structure of PedB: a structural basis for the classification of pediocin-like immunity proteins
Authors (first, second and last of 6)
- In-Kwon Kim
- Min-Kyu Kim
- Sa-Ouk Kang
- Content type: Research article
- Open Access
- Published: 30 May 2007
- Article: 35