Volume 14, supplement issue 1, January 2013

Selected articles from the Eleventh Asia Pacific Bioinformatics Conference (APBC 2013): Genomics

Issue editors

Cenk Sahinalp
Steven Jones

16 articles in this issue

A unified approach for allele frequency estimation, SNP detection and association studies based on pooled sequencing data using EM algorithms

Authors
- Quan Chen
- Fengzhu Sun
- Content type: Proceedings
- Open Access
- Published: 21 January 2013
- Article: S1
A computational approach for identifying microRNA-target interactions using high-throughput CLIP and PAR-CLIP sequencing

Authors (first, second and last of 10)
- Chih-Hung Chou
- Feng-Mao Lin
- Hsien-Da Huang
- Content type: Proceedings
- Open Access
- Published: 21 January 2013
- Article: S2
Expanding the boundaries of local similarity analysis

Authors (first, second and last of 4)
- W Evan Durno
- Niels W Hanson
- Steven J Hallam
- Content type: Proceedings
- Open Access
- Published: 21 January 2013
- Article: S3
A genome-wide cis-regulatory element discovery method based on promoter sequences and gene co-expression networks

Authors
- Zhen Gao
- Ruizhe Zhao
- Jianhua Ruan
- Content type: Proceedings
- Open Access
- Published: 21 January 2013
- Article: S4
Genomic differences between cultivated soybean, G. max and its wild relative G. soja

Authors (first, second and last of 6)
- Trupti Joshi
- Babu Valliyodan
- Henry T Nguyen
- Content type: Proceedings
- Open Access
- Published: 21 January 2013
- Article: S5
FitSearch: a robust way to interpret a yeast fitness profile in terms of drug's mode-of-action

Authors (first, second and last of 6)
- Minho Lee
- Sangjo Han
- Dongsup Kim
- Content type: Proceedings
- Open Access
- Published: 21 January 2013
- Article: S6
BayesHammer: Bayesian clustering for error correction in single-cell sequencing

Authors
- Sergey I Nikolenko
- Anton I Korobeynikov
- Max A Alekseyev
- Content type: Proceedings
- Open Access
- Published: 21 January 2013
- Article: S7
Genome reassembly with high-throughput sequencing data

Authors
- Nathaniel Parrish
- Benjamin Sudakov
- Eleazar Eskin
- Content type: Proceedings
- Open Access
- Published: 21 January 2013
- Article: S8
Improved moderation for gene-wise variance estimation in RNA-Seq via the exploitation of external information

Authors (first, second and last of 4)
- Ellis Patrick
- Michael Buckley
- Yee Hwa Yang
- Content type: Proceedings
- Open Access
- Published: 21 January 2013
- Article: S9
Sum of parts is greater than the whole: inference of common genetic history of populations

Authors
- Filippo Utro
- Marc Pybus
- Laxmi Parida
- Content type: Proceedings
- Open Access
- Published: 21 January 2013
- Article: S10
A probabilistic method for identifying rare variants underlying complex traits

Authors (first, second and last of 5)
- Jiayin Wang
- Zhongmeng Zhao
- Jin Zhang
- Content type: Proceedings
- Open Access
- Published: 21 January 2013
- Article: S11
Unraveling overlapping deletions by agglomerative clustering

Authors
- Roland Wittler
- Content type: Proceedings
- Open Access
- Published: 21 January 2013
- Article: S12
Accelerating read mapping with FastHASH

Authors (first, second and last of 6)
- Hongyi Xin
- Donghyuk Lee
- Can Alkan
- Content type: Proceedings
- Open Access
- Published: 21 January 2013
- Article: S13
Scoring relevancy of features based on combinatorial analysis of Lasso with application to lymphoma diagnosis

Authors (first, second and last of 4)
- Habil Zare
- Gholamreza Haffari
- Ryan R Brinkman
- Content type: Proceedings
- Open Access
- Published: 21 January 2013
- Article: S14
Inferring evolution of gene duplicates using probabilistic models and nonparametric belief propagation

Authors
- Jia Zeng
- Sridhar Hannenhalli
- Content type: Proceedings
- Open Access
- Published: 21 January 2013
- Article: S15
Erratum to: Unraveling overlapping deletions by agglomerative clustering

Authors
- Roland Wittler
- Content type: Erratum
- Open Access
- Published: 15 March 2013
- Article: S16

Volume 14, supplement issue 1, January 2013

Selected articles from the Eleventh Asia Pacific Bioinformatics Conference (APBC 2013): Genomics

A unified approach for allele frequency estimation, SNP detection and association studies based on pooled sequencing data using EM algorithms

A computational approach for identifying microRNA-target interactions using high-throughput CLIP and PAR-CLIP sequencing

Expanding the boundaries of local similarity analysis

A genome-wide cis-regulatory element discovery method based on promoter sequences and gene co-expression networks

Genomic differences between cultivated soybean, G. max and its wild relative G. soja

FitSearch: a robust way to interpret a yeast fitness profile in terms of drug's mode-of-action

BayesHammer: Bayesian clustering for error correction in single-cell sequencing

Genome reassembly with high-throughput sequencing data

Improved moderation for gene-wise variance estimation in RNA-Seq via the exploitation of external information

Sum of parts is greater than the whole: inference of common genetic history of populations

A probabilistic method for identifying rare variants underlying complex traits

Unraveling overlapping deletions by agglomerative clustering

Accelerating read mapping with FastHASH

Scoring relevancy of features based on combinatorial analysis of Lasso with application to lymphoma diagnosis

Inferring evolution of gene duplicates using probabilistic models and nonparametric belief propagation

Erratum to: Unraveling overlapping deletions by agglomerative clustering

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Volume 14, supplement issue 1, January 2013

Selected articles from the Eleventh Asia Pacific Bioinformatics Conference (APBC 2013): Genomics

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