Volume 13, supplement issue 7, December 2012
Eleventh International Conference on Bioinformatics (InCoB2012): Computational Biology
- Issue editors
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- Shoba Ranganathan
- Christian Schönbach
- Sissades Tongsima
- Jonathan Chan
- Tin Wee Tan
29 articles in this issue
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iLOCi: a SNP interaction prioritization technique for detecting epistasis in genome-wide association studies
Authors (first, second and last of 8)
- Jittima Piriyapongsa
- Chumpol Ngamphiw
- Sissades Tongsima
- Content type: Proceedings
- Open Access
- Published: 13 December 2012
- Article: S2
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Bayesian prediction of bacterial growth temperature range based on genome sequences
Authors (first, second and last of 5)
- Dan B Jensen
- Tammi C Vesth
- David W Ussery
- Content type: Proceedings
- Open Access
- Published: 13 December 2012
- Article: S3
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Whole-genome sequencing and identification of Morganella morganii KT pathogenicity-related genes
Authors (first, second and last of 12)
- Yu-Tin Chen
- Hwei-Ling Peng
- Tien-Hsiung Ku
- Content type: Proceedings
- Open Access
- Published: 13 December 2012
- Article: S4
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Quantitative assessment of mitochondrial DNA copies from whole genome sequencing
Authors (first, second and last of 13)
- Hsueh-Ting Chu
- William WL Hsiao
- Cheng-Yan Kao
- Content type: Proceedings
- Open Access
- Published: 13 December 2012
- Article: S5
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snpTree - a web-server to identify and construct SNP trees from whole genome sequence data
Authors (first, second and last of 6)
- Pimlapas Leekitcharoenphon
- Rolf S Kaas
- Frank M Aarestrup
- Content type: Proceedings
- Open Access
- Published: 13 December 2012
- Article: S6
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Feasibility of using 454 pyrosequencing for studying quasispecies of the whole dengue viral genome
Authors (first, second and last of 8)
- Kwanrutai Chin-inmanu
- Aroonroong Suttitheptumrong
- Prapat Suriyaphol
- Content type: Proceedings
- Open Access
- Published: 13 December 2012
- Article: S7
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Helminth secretome database (HSD): a collection of helminth excretory/secretory proteins predicted from expressed sequence tags (ESTs)
Authors
- Gagan Garg
- Shoba Ranganathan
- Content type: Proceedings
- Open Access
- Published: 13 December 2012
- Article: S8
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FastAnnotator- an efficient transcript annotation web tool
Authors (first, second and last of 8)
- Ting-Wen Chen
- Ruei-Chi Richie Gan
- Petrus Tang
- Content type: Proceedings
- Open Access
- Published: 13 December 2012
- Article: S9
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An analysis of the transcriptome of Teladorsagia circumcincta: its biological and biotechnological implications
Authors (first, second and last of 4)
- Ranjeeta Menon
- Robin B Gasser
- Shoba Ranganathan
- Content type: Proceedings
- Open Access
- Published: 13 December 2012
- Article: S10
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A novel unbiased measure for motif co-occurrence predicts combinatorial regulation of transcription
Authors (first, second and last of 4)
- Alexis Vandenbon
- Yutaro Kumagai
- Daron M Standley
- Content type: Proceedings
- Open Access
- Published: 13 December 2012
- Article: S11
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Meta-analytical biomarker search of EST expression data reveals three differentially expressed candidates
Authors (first, second and last of 7)
- Timothy H Wu
- Lichieh J Chu
- Wailap V Ng
- Content type: Proceedings
- Open Access
- Published: 13 December 2012
- Article: S12
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Computational discovery and RT-PCR validation of novel Burkholderia conserved and Burkholderia pseudomallei unique sRNAs
Authors (first, second and last of 5)
- Jia-Shiun Khoo
- Shiao-Fei Chai
- Mohd Firdaus-Raih
- Content type: Proceedings
- Open Access
- Published: 13 December 2012
- Article: S13
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Preferential regulation of stably expressed genes in the human genome suggests a widespread expression buffering role of microRNAs
Authors (first, second and last of 6)
- Zhen Yang
- Dong Dong
- Yang Zhong
- Content type: Proceedings
- Open Access
- Published: 13 December 2012
- Article: S14
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A computational tool for the design of live attenuated virus vaccine based on microRNA-mediated gene silencing
Authors (first, second and last of 4)
- Duangdao Wichadakul
- Wuttichai Mhuantong
- Supawadee Ingsriswang
- Content type: Proceedings
- Open Access
- Published: 13 December 2012
- Article: S15
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C-mii: a tool for plant miRNA and target identification
Authors (first, second and last of 4)
- Somrak Numnark
- Wuttichai Mhuantong
- Duangdao Wichadakul
- Content type: Proceedings
- Open Access
- Published: 13 December 2012
- Article: S16
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MicroRNA-centric measurement improves functional enrichment analysis of co-expressed and differentially expressed microRNA clusters
Authors
- Su Yeon Lee
- Kyung-Ah Sohn
- Ju Han Kim
- Content type: Proceedings
- Open Access
- Published: 13 December 2012
- Article: S17
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Comprehensive analysis of microRNAs in breast cancer
Authors (first, second and last of 9)
- Hong-Tai Chang
- Sung-Chou Li
- Kuo-Wang Tsai
- Content type: Proceedings
- Open Access
- Published: 13 December 2012
- Article: S18
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The parasite specific substitution matrices improve the annotation of apicomplexan proteins
Authors
- Jamshaid Ali
- Shashi Rekha Thummala
- Akash Ranjan
- Content type: Proceedings
- Open Access
- Published: 13 December 2012
- Article: S19
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Blocking Protein kinase C signaling pathway: mechanistic insights into the anti-leishmanial activity of prospective herbal drugs from Withania somnifera
Authors (first, second and last of 5)
- Abhinav Grover
- Shashank Prakash Katiyar
- Durai Sundar
- Content type: Proceedings
- Open Access
- Published: 13 December 2012
- Article: S20
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Space-related pharma-motifs for fast search of protein binding motifs and polypharmacological targets
Authors (first, second and last of 6)
- Yi-Yuan Chiu
- Chun-Yu Lin
- Jinn-Moon Yang
- Content type: Proceedings
- Open Access
- Published: 13 December 2012
- Article: S21
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In silico engineering of aggregation-prone recombinant proteins for substrate recognition by the chaperonin GroEL
Authors (first, second and last of 4)
- Vipul Kumar
- Ankita Punetha
- Tapan K Chaudhuri
- Content type: Proceedings
- Open Access
- Published: 13 December 2012
- Article: S22
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An approach to identifying drug resistance associated mutations in bacterial strains
Authors
- Michal Wozniak
- Jerzy Tiuryn
- Limsoon Wong
- Content type: Proceedings
- Open Access
- Published: 13 December 2012
- Article: S23
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Integration of interactive, multi-scale network navigation approach with Cytoscape for functional genomics in the big data era
Authors
- Thanet Praneenararat
- Toshihisa Takagi
- Wataru Iwasaki
- Content type: Proceedings
- Open Access
- Published: 13 December 2012
- Article: S24
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Discovering pathway cross-talks based on functional relations between pathways
Authors
- Chia-Lang Hsu
- Ueng-Cheng Yang
- Content type: Proceedings
- Open Access
- Published: 13 December 2012
- Article: S25
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Comparison and evaluation of pathway-level aggregation methods of gene expression data
Authors
- Seungwoo Hwang
- Content type: Proceedings
- Open Access
- Published: 13 December 2012
- Article: S26
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Disease gene identification by random walk on multigraphs merging heterogeneous genomic and phenotype data
Authors
- Yongjin Li
- Jinyan Li
- Content type: Proceedings
- Open Access
- Published: 13 December 2012
- Article: S27
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A de novo next generation genomic sequence assembler based on string graph and MapReduce cloud computing framework
Authors (first, second and last of 4)
- Yu-Jung Chang
- Chien-Chih Chen
- Jan-Ming Ho
- Content type: Proceedings
- Open Access
- Published: 13 December 2012
- Article: S28
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Metagenomic profiles of free-living archaea, bacteria and small eukaryotes in coastal areas of Sichang island, Thailand
Authors (first, second and last of 5)
- Naraporn Somboonna
- Anunchai Assawamakin
- Sissades Tongsima
- Content type: Proceedings
- Open Access
- Published: 13 December 2012
- Article: S29