Volume 11, supplement issue 1, February 2010
International Workshop on Computational Systems Biology: Approaches to Analysis of Genome Complexity and Regulatory Gene Networks
- Issue editors
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- Vladimir A Kuznetsov
- Jun Liu
15 articles in this issue
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Collective motions and specific effectors: a statistical mechanics perspective on biological regulation
Authors
- Alessandro Giuliani
- Content type: Research
- Open Access
- Published: 10 February 2010
- Article: S2
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Computational approaches for detecting protein complexes from protein interaction networks: a survey
Authors (first, second and last of 4)
- Xiaoli Li
- Min Wu
- See-Kiong Ng
- Content type: Research
- Open Access
- Published: 10 February 2010
- Article: S3
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Projection of gene-protein networks to the functional space of the proteome and its application to analysis of organism complexity
Authors
- Alexander A Kanapin
- Nicola Mulder
- Vladimir A Kuznetsov
- Content type: Research
- Open Access
- Published: 10 February 2010
- Article: S4
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Differences in the transactivation domains of p53 family members: a computational study
Authors (first, second and last of 5)
- Jagadeesh N Mavinahalli
- Arumugam Madhumalar
- Chandra Verma
- Content type: Research
- Open Access
- Published: 10 February 2010
- Article: S5
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Analysis of deep sequencing microRNA expression profile from human embryonic stem cells derived mesenchymal stem cells reveals possible role of let-7 microRNA family in downstream targeting of Hepatic Nuclear Factor 4 Alpha
Authors (first, second and last of 7)
- Winston Koh
- Chen Tian Sheng
- Vivek Tanavde
- Content type: Research
- Open Access
- Published: 10 February 2010
- Article: S6
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Data integration and exploration for the identification of molecular mechanisms in tumor-immune cells interaction
Authors (first, second and last of 8)
- Bernhard Mlecnik
- Fatima Sanchez-Cabo
- Zlatko Trajanoski
- Content type: Research
- Open Access
- Published: 10 February 2010
- Article: S7
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Bimodal gene expression patterns in breast cancer
Authors (first, second and last of 6)
- Marina Bessarabova
- Eugene Kirillov
- Tatiana Nikolskaya
- Content type: Research
- Open Access
- Published: 10 February 2010
- Article: S8
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Complex sense-antisense architecture of TNFAIP1/POLDIP2 on 17q11.2 represents a novel transcriptional structural-functional gene module involved in breast cancer progression
Authors
- Oleg V Grinchuk
- Efthimios Motakis
- Vladimir A Kuznetsov
- Content type: Research
- Open Access
- Published: 10 February 2010
- Article: S9
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Transposon identification using profile HMMs
Authors
- Paul T Edlefsen
- Jun S Liu
- Content type: Research
- Open Access
- Published: 10 February 2010
- Article: S10
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Modeling neutral evolution of Alu elements using a branching process
Authors
- Marek Kimmel
- Matthias Mathaes
- Content type: Research
- Open Access
- Published: 10 February 2010
- Article: S11
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Statistics of protein-DNA binding and the total number of binding sites for a transcription factor in the mammalian genome
Authors
- Vladimir A Kuznetsov
- Onkar Singh
- Piroon Jenjaroenpun
- Content type: Research
- Open Access
- Published: 10 February 2010
- Article: S12
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Reducing the haystack to find the needle: improved protein identification after fast elimination of non-interpretable peptide MS/MS spectra and noise reduction
Authors (first, second and last of 5)
- Nedim Mujezinovic
- Georg Schneider
- Frank Eisenhaber
- Content type: Research
- Open Access
- Published: 10 February 2010
- Article: S13
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Bioinformatic search of plant microtubule-and cell cycle related serine-threonine protein kinases
Authors (first, second and last of 7)
- Pavel A Karpov
- Elena S Nadezhdina
- Yaroslav B Blume
- Content type: Research
- Open Access
- Published: 10 February 2010
- Article: S14
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Parameterization of disorder predictors for large-scale applications requiring high specificity by using an extended benchmark dataset
Authors (first, second and last of 6)
- Fernanda L Sirota
- Hong-Sain Ooi
- Sebastian Maurer-Stroh
- Content type: Research
- Open Access
- Published: 10 February 2010
- Article: S15