Volume 15, supplement issue 9, December 2014

Thirteenth International Conference on Bioinformatics (InCoB2014): Computational Biology

Issue editors

Shoba Ranganathan
Christian Schönbach
Tin Wee Tan

21 articles in this issue

Pathway analysis and transcriptomics improve protein identification by shotgun proteomics from samples comprising small number of cells - a benchmarking study

Authors (first, second and last of 9)
- Jing Sun
- Guang Lan Zhang
- Vladimir Brusic
- Content type: Research
- Open Access
- Published: 08 December 2014
- Article: S1
TINAGL1 and B3GALNT1 are potential therapy target genes to suppress metastasis in non-small cell lung cancer

Authors
- Hideaki Umeyama
- Mitsuo Iwadate
- Y-h Taguchi
- Content type: Research
- Open Access
- Published: 08 December 2014
- Article: S2
Fragment based group QSAR and molecular dynamics mechanistic studies on arylthioindole derivatives targeting the α-β interfacial site of human tubulin

Authors (first, second and last of 5)
- Chetna Tyagi
- Ankita Gupta
- Abhinav Grover
- Content type: Research
- Open Access
- Published: 08 December 2014
- Article: S3
Whole genome sequence and analysis of the Marwari horse breed and its genetic origin

Authors (first, second and last of 13)
- JeHoon Jun
- Yun Sung Cho
- Jong Bhak
- Content type: Research
- Open Access
- Published: 08 December 2014
- Article: S4
The Yeast Nucleosome Atlas (YNA) database: an integrative gene mining platform for studying chromatin structure and its regulation in yeast

Authors (first, second and last of 4)
- Po-Cheng Hung
- Tzu-Hsien Yang
- Wei-Sheng Wu
- Content type: Research
- Open Access
- Published: 08 December 2014
- Article: S5
Transcriptome alterations of mitochondrial and coagulation function in schizophrenia by cortical sequencing analysis

Authors (first, second and last of 5)
- Kuo-Chuan Huang
- Ko-Chun Yang
- Sheng-An Lee
- Content type: Research
- Open Access
- Published: 08 December 2014
- Article: S6
HOXD-AS1 is a novel lncRNA encoded in HOXD cluster and a marker of neuroblastoma progression revealed via integrative analysis of noncoding transcriptome

Authors (first, second and last of 7)
- Aliaksandr A Yarmishyn
- Arsen O Batagov
- Igor V Kurochkin
- Content type: Research
- Open Access
- Published: 08 December 2014
- Article: S7
Homopharma: A new concept for exploring the molecular binding mechanisms and drug repurposing

Authors (first, second and last of 6)
- Yi-Yuan Chiu
- Jen-Hu Tseng
- Jinn-Moon Yang
- Content type: Research
- Open Access
- Published: 08 December 2014
- Article: S8
MHC2MIL: a novel multiple instance learning based method for MHC-II peptide binding prediction by considering peptide flanking region and residue positions

Authors (first, second and last of 5)
- Yichang Xu
- Cheng Luo
- Shanfeng Zhu
- Content type: Research
- Open Access
- Published: 08 December 2014
- Article: S9
Assessment of de novoassemblers for draft genomes: a case study with fungal genomes

Authors
- Mostafa M Abbas
- Qutaibah M Malluhi
- Ponnuraman Balakrishnan
- Content type: Research
- Open Access
- Published: 08 December 2014
- Article: S10
Revealing editing and SNPs of microRNAs in colon tissues by analyzing high-throughput sequencing profiles of small RNAs

Authors (first, second and last of 5)
- Yun Zheng
- Ting Li
- Shengpeng Wang
- Content type: Research
- Open Access
- Published: 08 December 2014
- Article: S11
dCaP: detecting differential binding events in multiple conditions and proteins

Authors
- Kuan-Bei Chen
- Ross Hardison
- Yu Zhang
- Content type: Research
- Open Access
- Published: 08 December 2014
- Article: S12
Complete chloroplast genome of Macadamia integrifoliaconfirms the position of the Gondwanan early-diverging eudicot family Proteaceae

Authors
- Catherine J Nock
- Abdul Baten
- Graham J King
- Content type: Research
- Open Access
- Published: 08 December 2014
- Article: S13
funRNA: a fungi-centered genomics platform for genes encoding key components of RNAi

Authors (first, second and last of 7)
- Jaeyoung Choi
- Ki-Tae Kim
- Yong-Hwan Lee
- Content type: Research
- Open Access
- Published: 08 December 2014
- Article: S14
Using hidden Markov models to investigate G-quadruplex motifs in genomic sequences

Authors
- Masato Yano
- Yuki Kato
- Content type: Research
- Open Access
- Published: 08 December 2014
- Article: S15
Rule discovery and distance separation to detect reliable miRNA biomarkers for the diagnosis of lung squamous cell carcinoma

Authors (first, second and last of 7)
- Renhua Song
- Qian Liu
- Jinyan Li
- Content type: Research
- Open Access
- Published: 08 December 2014
- Article: S16
Semi-supervised multi-label collective classification ensemble for functional genomics

Authors (first, second and last of 4)
- Qingyao Wu
- Yunming Ye
- Shuigeng Zhou
- Content type: Research
- Open Access
- Published: 08 December 2014
- Article: S17
Predicting sumoylation sites using support vector machines based on various sequence features, conformational flexibility and disorder

Authors
- Ahmet Sinan Yavuz
- Osman Ugur Sezerman
- Content type: Research
- Open Access
- Published: 08 December 2014
- Article: S18
The bacterial proteogenomic pipeline

Authors (first, second and last of 5)
- Julian Uszkoreit
- Nicole Plohnke
- Martin Eisenacher
- Content type: Research
- Open Access
- Published: 08 December 2014
- Article: S19
Novel SNP improves differential survivability and mortality in non-small cell lung cancer patients

Authors (first, second and last of 14)
- Tzia Liang Mah
- Xin Ning Adeline Yap
- Joo Chuan Tong
- Content type: Research
- Open Access
- Published: 08 December 2014
- Article: S20
InCoB2014: mining biological data from genomics for transforming industry and health

Authors
- Christian Schönbach
- Tin Wee Tan
- Shoba Ranganathan
- Content type: Introduction
- Open Access
- Published: 08 December 2014
- Article: I1

Volume 15, supplement issue 9, December 2014

Thirteenth International Conference on Bioinformatics (InCoB2014): Computational Biology

Pathway analysis and transcriptomics improve protein identification by shotgun proteomics from samples comprising small number of cells - a benchmarking study

TINAGL1 and B3GALNT1 are potential therapy target genes to suppress metastasis in non-small cell lung cancer

Fragment based group QSAR and molecular dynamics mechanistic studies on arylthioindole derivatives targeting the α-β interfacial site of human tubulin

Whole genome sequence and analysis of the Marwari horse breed and its genetic origin

The Yeast Nucleosome Atlas (YNA) database: an integrative gene mining platform for studying chromatin structure and its regulation in yeast

Transcriptome alterations of mitochondrial and coagulation function in schizophrenia by cortical sequencing analysis

HOXD-AS1 is a novel lncRNA encoded in HOXD cluster and a marker of neuroblastoma progression revealed via integrative analysis of noncoding transcriptome

Homopharma: A new concept for exploring the molecular binding mechanisms and drug repurposing

MHC2MIL: a novel multiple instance learning based method for MHC-II peptide binding prediction by considering peptide flanking region and residue positions

Assessment of de novoassemblers for draft genomes: a case study with fungal genomes

Revealing editing and SNPs of microRNAs in colon tissues by analyzing high-throughput sequencing profiles of small RNAs

dCaP: detecting differential binding events in multiple conditions and proteins

Complete chloroplast genome of Macadamia integrifoliaconfirms the position of the Gondwanan early-diverging eudicot family Proteaceae

funRNA: a fungi-centered genomics platform for genes encoding key components of RNAi

Using hidden Markov models to investigate G-quadruplex motifs in genomic sequences

Rule discovery and distance separation to detect reliable miRNA biomarkers for the diagnosis of lung squamous cell carcinoma

Semi-supervised multi-label collective classification ensemble for functional genomics

Predicting sumoylation sites using support vector machines based on various sequence features, conformational flexibility and disorder

The bacterial proteogenomic pipeline

Novel SNP improves differential survivability and mortality in non-small cell lung cancer patients

InCoB2014: mining biological data from genomics for transforming industry and health

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Volume 15, supplement issue 9, December 2014

Thirteenth International Conference on Bioinformatics (InCoB2014): Computational Biology

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