Comprehensive structural annotation of Pichia pastoris transcriptome and the response to various carbon sources using deep paired-end RNA sequencing
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Volume 13, issue 1, December 2012
738 articles in this issue
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A model of binding on DNA microarrays: understanding the combined effect of probe synthesis failure, cross-hybridization, DNA fragmentation and other experimental details of affymetrix arrays
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A genomic scale map of genetic diversity in Trypanosoma cruzi
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Genomic basis of broad host range and environmental adaptability of Rhizobium tropici CIAT 899 and Rhizobium sp. PRF 81 which are used in inoculants for common bean (Phaseolus vulgaris L.)
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How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?
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A comprehensive survey of copy number variation in 18 diverse pig populations and identification of candidate copy number variable genes associated with complex traits
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An integrative analysis of cellular contexts, miRNAs and mRNAs reveals network clusters associated with antiestrogen-resistant breast cancer cells
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Expression profiles of microRNAs from lactating and non-lactating bovine mammary glands and identification of miRNA related to lactation
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Comparison of metagenomic samples using sequence signatures
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The prediction of the porcine pre-microRNAs in genome-wide based on support vector machine (SVM) and homology searching
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Genomic insights of protein arginine methyltransferase Hmt1 binding reveals novel regulatory functions
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Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
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Development of high-throughput SNP-based genotyping in Acacia auriculiformis x A. mangium hybrids using short-read transcriptome data
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Identification of genome-wide copy number variations among diverse pig breeds by array CGH
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Single nucleotide polymorphism discovery in cutthroat trout subspecies using genome reduction, barcoding, and 454 pyro-sequencing
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Genome-guided analysis of physiological and morphological traits of the fermentative acetate oxidizer Thermacetogenium phaeum
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Next generation sequencing analysis reveals a relationship between rDNA unit diversity and locus number in Nicotiana diploids
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Strand-specific RNA-seq reveals widespread occurrence of novel cis- natural antisense transcripts in rice
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Abundance, distribution and potential impact of transposable elements in the genome of Mycosphaerella fijiensis
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Structural analysis of the genome of breast cancer cell line ZR-75-30 identifies twelve expressed fusion genes
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Evolutionary relationships between miRNA genes and their activity
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Evolution of cis-regulatory elements in yeast de novo and duplicated new genes
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Transcriptome analysis of Sacha Inchi (Plukenetia volubilis L.) seeds at two developmental stages
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CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences
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MicroRNAs and essential components of the microRNA processing machinery are not encoded in the genome of the ctenophore Mnemiopsis leidyi
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Differences in enhancer activity in mouse and zebrafish reporter assays are often associated with changes in gene expression
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Multiple secretoglobin 1A1 genes are differentially expressed in horses
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An integrated approach of comparative genomics and heritability analysis of pig and human on obesity trait: evidence for candidate genes on human chromosome 2
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The arthritis severity locus Cia5a regulates the expression of inflammatory mediators including Syk pathway genes and proteases in pristane-induced arthritis
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Pan-histone deacetylase inhibitors regulate signaling pathways involved in proliferative and pro-inflammatory mechanisms in H9c2 cells
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Identification of 3′ gene ends using transcriptional and genomic conservation across vertebrates
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Insights into the regulation of human CNV-miRNAs from the view of their target genes
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Genetic architecture of complex agronomic traits examined in two testcross populations of rye (Secale cereale L.)
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ChIP-on-chip analysis identifies IL-22 as direct target gene of ectopically expressed FOXP3 transcription factor in human T cells
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A genome-wide scan of selective sweeps in two broiler chicken lines divergently selected for abdominal fat content
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Targeted enrichment of the black cottonwood (Populus trichocarpa) gene space using sequence capture
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Is chemically dispersed oil more toxic to Atlantic cod (Gadus morhua) larvae than mechanically dispersed oil? A transcriptional evaluation
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The transcriptomic fingerprint of glucoamylase over-expression in Aspergillus niger
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Transcriptomic analysis of ‘Suli’ pear (Pyrus pyrifolia white pear group) buds during the dormancy by RNA-Seq
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Evaluation method for the potential functionome harbored in the genome and metagenome
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Sequencing of mitochondrial genomes of nine Aspergillus and Penicillium species identifies mobile introns and accessory genes as main sources of genome size variability
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Genome-Wide Characterization of the Phosphate Starvation Response in Schizosaccharomyces pombe
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De novo reconstruction of the Toxoplasma gondii transcriptome improves on the current genome annotation and reveals alternatively spliced transcripts and putative long non-coding RNAs
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A novel method to discover fluoroquinolone antibiotic resistance (qnr) genes in fragmented nucleotide sequences
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Structure and evolution of barley powdery mildew effector candidates
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Determination of haplotypes at structurally complex regions using emulsion haplotype fusion PCR
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Exome-assistant: a rapid and easy detection of disease-related genes and genetic variations from exome sequencing
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Transcriptome analysis at four developmental stages of grape berry (Vitis vinifera cv. Shiraz) provides insights into regulated and coordinated gene expression
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The genome of Pelobacter carbinolicus reveals surprising metabolic capabilities and physiological features
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OSAT: a tool for sample-to-batch allocations in genomics experiments
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