Volume 11, supplement issue 4, December 2010
Ninth International Conference on Bioinformatics (InCoB2010): Computational Biology
- Issue editors
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- Christian Schönbach
- Kenta Nakai
- Tin Wee Tan
- Shoba Ranganathan
27 articles in this issue
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Predicting RNA-binding residues from evolutionary information and sequence conservation
Authors (first, second and last of 4)
- Yu-Feng Huang
- Li-Yuan Chiu
- Chien-Kang Huang
- Content type: Proceedings
- Open Access
- Published: 02 December 2010
- Article: S2
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Sequence-dependent histone variant positioning signatures
Authors
- Ngoc Tu Le
- Tu Bao Ho
- Bich Hai Ho
- Content type: Proceedings
- Open Access
- Published: 02 December 2010
- Article: S3
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Improving protein secondary structure prediction based on short subsequences with local structure similarity
Authors (first, second and last of 4)
- Hsin-Nan Lin
- Ting-Yi Sung
- Wen-Lian Hsu
- Content type: Proceedings
- Open Access
- Published: 02 December 2010
- Article: S4
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dbDEMC: a database of differentially expressed miRNAs in human cancers
Authors (first, second and last of 13)
- Zhen Yang
- Fei Ren
- Haitao Zhao
- Content type: Proceedings
- Open Access
- Published: 02 December 2010
- Article: S5
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UPS 2.0: unique probe selector for probe design and oligonucleotide microarrays at the pangenomic/ genomic level
Authors (first, second and last of 6)
- Shu-Hwa Chen
- Chen-Zen Lo
- Chung-Yen Lin
- Content type: Proceedings
- Open Access
- Published: 02 December 2010
- Article: S6
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NGSQC: cross-platform quality analysis pipeline for deep sequencing data
Authors (first, second and last of 8)
- Manhong Dai
- Robert C Thompson
- Fan Meng
- Content type: Proceedings
- Open Access
- Published: 02 December 2010
- Article: S7
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Discovery and characterization of medaka miRNA genes by next generation sequencing platform
Authors (first, second and last of 9)
- Sung-Chou Li
- Wen-Ching Chan
- Wen-chang Lin
- Content type: Proceedings
- Open Access
- Published: 02 December 2010
- Article: S8
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In vitro homology search array comprehensively reveals highly conserved genes and their functional characteristics in non-sequenced species
Authors (first, second and last of 4)
- Atsushi Ogura
- Masa-aki Yoshida
- Jun Sese
- Content type: Proceedings
- Open Access
- Published: 02 December 2010
- Article: S9
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Evolutionary patterns of amino acid substitutions in 12 Drosophila genomes
Authors
- Lev Y Yampolsky
- Michael A Bouzinier
- Content type: Proceedings
- Open Access
- Published: 02 December 2010
- Article: S10
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Refining orthologue groups at the transcript level
Authors (first, second and last of 5)
- Yizhen Jia
- Thomas KF Wong
- David K Smith
- Content type: Proceedings
- Open Access
- Published: 02 December 2010
- Article: S11
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RNA editing of nuclear transcripts in Arabidopsis thaliana
Authors (first, second and last of 6)
- Yijun Meng
- Dijun Chen
- Ming Chen
- Content type: Proceedings
- Open Access
- Published: 02 December 2010
- Article: S12
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PathLocdb: a comprehensive database for the subcellular localization of metabolic pathways and its application to multiple localization analysis
Authors
- Min Zhao
- Hong Qu
- Content type: Proceedings
- Open Access
- Published: 02 December 2010
- Article: S13
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Qualitative reasoning of dynamic gene regulatory interactions from gene expression data
Authors
- Yu Chen
- Byungkyu Park
- Kyungsook Han
- Content type: Proceedings
- Open Access
- Published: 02 December 2010
- Article: S14
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Probing the anticancer mechanism of prospective herbal drug Withaferin A on mammals: a case study on human and bovine proteasomes
Authors (first, second and last of 4)
- Abhinav Grover
- Ashutosh Shandilya
- Durai Sundar
- Content type: Proceedings
- Open Access
- Published: 02 December 2010
- Article: S15
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Construction of a genetic AND gate under a new standard for assembly of genetic parts
Authors (first, second and last of 12)
- Shotaro Ayukawa
- Akio Kobayashi
- Daisuke Kiga
- Content type: Proceedings
- Open Access
- Published: 02 December 2010
- Article: S16
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Exploring hierarchical and overlapping modular structure in the yeast protein interaction network
Authors
- Changning Liu
- Jing Li
- Yi Zhao
- Content type: Proceedings
- Open Access
- Published: 02 December 2010
- Article: S17
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Functional data analysis for identifying nonlinear models of gene regulatory networks
Authors
- Georg Summer
- Theodore J Perkins
- Content type: Proceedings
- Open Access
- Published: 02 December 2010
- Article: S18
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iCOD : an integrated clinical omics database based on the systems-pathology view of disease
Authors (first, second and last of 7)
- Kazuro Shimokawa
- Kaoru Mogushi
- Hiroshi Tanaka
- Content type: Proceedings
- Open Access
- Published: 02 December 2010
- Article: S19
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Gerontome: a web-based database server for aging-related genes and analysis pipelines
Authors
- Jekeun Kwon
- Byungwook Lee
- Haeyoung Chung
- Content type: Proceedings
- Open Access
- Published: 02 December 2010
- Article: S20
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SVM-based prediction of linear B-cell epitopes using Bayes Feature Extraction
Authors (first, second and last of 5)
- Lawrence JK Wee
- Diane Simarmata
- Joo Chuan Tong
- Content type: Proceedings
- Open Access
- Published: 02 December 2010
- Article: S21
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Hierarchical kernel mixture models for the prediction of AIDS disease progression using HIV structural gp120 profiles
Authors (first, second and last of 7)
- Paul D Yoo
- Yung Shwen Ho
- Albert Y Zomaya
- Content type: Proceedings
- Open Access
- Published: 02 December 2010
- Article: S22
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The interplay between evolution, regulation and tissue specificity in the Human Hereditary Diseasome
Authors
- Shivashankar H Nagaraj
- Aaron Ingham
- Antonio Reverter
- Content type: Proceedings
- Open Access
- Published: 02 December 2010
- Article: S23
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Algorithms and semantic infrastructure for mutation impact extraction and grounding
Authors (first, second and last of 6)
- Jonas B Laurila
- Nona Naderi
- Christopher JO Baker
- Content type: Proceedings
- Open Access
- Published: 02 December 2010
- Article: S24
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Inhibition of the NEMO/IKKβ association complex formation, a novel mechanism associated with the NF-κB activation suppression by Withania somnifera’s key metabolite withaferin A
Authors (first, second and last of 5)
- Abhinav Grover
- Ashutosh Shandilya
- Durai Sundar
- Content type: Proceedings
- Open Access
- Published: 02 December 2010
- Article: S25
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TSCC: Two-Stage Combinatorial Clustering for virtual screening using protein-ligand interactions and physicochemical features
Authors (first, second and last of 5)
- Daniel L Clinciu
- Yen-Fu Chen
- Jinn-Moon Yang
- Content type: Proceedings
- Open Access
- Published: 02 December 2010
- Article: S26
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Advancing standards for bioinformatics activities: persistence, reproducibility, disambiguation and Minimum Information About a Bioinformatics investigation (MIABi)
Authors (first, second and last of 6)
- Tin Wee Tan
- Joo Chuan Tong
- Shoba Ranganathan
- Content type: Perspective
- Open Access
- Published: 02 December 2010
- Article: S27