Volume 17, supplement issue 13, October 2016

Proceedings of the 13th Annual MCBIOS conference

Issue editors

Jonathan Wren
Inimary Toby
Huxiao Hong
Bindu Nanduri
Rakesh Kaundal
Mikhail Dozmorov
Shraddha Thakkar

15 articles in this issue

Effective comparative analysis of protein-protein interaction networks by measuring the steady-state network flow using a Markov model

Authors
- Hyundoo Jeong
- Xiaoning Qian
- Byung-Jun Yoon
- Content type: PROCEEDINGS
- Open Access
- Published: 06 October 2016
- Article: 395
CC-PROMISE effectively integrates two forms of molecular data with multiple biologically related endpoints

Authors (first, second and last of 5)
- Xueyuan Cao
- Kristine R. Crews
- Stanley B. Pounds
- Content type: Research
- Open Access
- Published: 06 October 2016
- Article: 382
Phylogenetic tree construction using trinucleotide usage profile (TUP)

Authors (first, second and last of 7)
- Si Chen
- Lih-Yuan Deng
- Henry Horng-Shing Lu
- Content type: PROCEEDINGS
- Open Access
- Published: 06 October 2016
- Article: 381
Application of dynamic topic models to toxicogenomics data

Authors (first, second and last of 4)
- Mikyung Lee
- Zhichao Liu
- Weida Tong
- Content type: Proceedings
- Open Access
- Published: 06 October 2016
- Article: 368
Abrupt skin lesion border cutoff measurement for malignancy detection in dermoscopy images

Authors (first, second and last of 7)
- Sertan Kaya
- Mustafa Bayraktar
- Henry K. Wong
- Content type: Proceedings
- Open Access
- Published: 06 October 2016
- Article: 367
Successful classification of cocaine dependence using brain imaging: a generalizable machine learning approach

Authors (first, second and last of 6)
- Mutlu Mete
- Unal Sakoglu
- Bryon Adinoff
- Content type: Proceedings
- Open Access
- Published: 06 October 2016
- Article: 357
Proceedings of the 2016 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference

Authors (first, second and last of 7)
- Jonathan D. Wren
- Inimary Toby
- Shraddha Thakkar
- Content type: Introduction
- Open Access
- Published: 06 October 2016
- Article: 356
Incorporating topological information for predicting robust cancer subnetwork markers in human protein-protein interaction network

Authors
- Navadon Khunlertgit
- Byung-Jun Yoon
- Content type: PROCEEDINGS
- Open Access
- Published: 06 October 2016
- Article: 351
Prioritization, clustering and functional annotation of MicroRNAs using latent semantic indexing of MEDLINE abstracts

Authors (first, second and last of 4)
- Sujoy Roy
- Brandon C. Curry
- Ramin Homayouni
- Content type: PROCEEDINGS
- Open Access
- Published: 06 October 2016
- Article: 350
Analysis of optimal alignments unfolds aligners’ bias in existing variant profiles

Authors
- Quang Tran
- Shanshan Gao
- Vinhthuy Phan
- Content type: PROCEEDINGS
- Open Access
- Published: 06 October 2016
- Article: 349
PGen: large-scale genomic variations analysis workflow and browser in SoyKB

Authors (first, second and last of 14)
- Yang Liu
- Saad M. Khan
- Trupti Joshi
- Content type: Proceedings
- Open Access
- Published: 06 October 2016
- Article: 337
Dissecting the biological relationship between TCGA miRNA and mRNA sequencing data using MMiRNA-Viewer

Authors (first, second and last of 9)
- Yongsheng Bai
- Lizhong Ding
- Gary Stuart
- Content type: Proceedings
- Open Access
- Published: 06 October 2016
- Article: 336
Leveraging graph topology and semantic context for pharmacovigilance through twitter-streams

Authors
- Ryan Eshleman
- Rahul Singh
- Content type: Proceedings
- Open Access
- Published: 06 October 2016
- Article: 335
Improving sensitivity of linear regression-based cell type-specific differential expression deconvolution with per-gene vs. global significance threshold

Authors
- Edmund R. Glass
- Mikhail G. Dozmorov
- Content type: Proceedings
- Open Access
- Published: 06 October 2016
- Article: 334
VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements

Authors (first, second and last of 23)
- Inimary T. Toby
- Mikhail K. Levin
- Lindsay G. Cowell
- Content type: Proceedings
- Open Access
- Published: 06 October 2016
- Article: 333

Volume 17, supplement issue 13, October 2016

Proceedings of the 13th Annual MCBIOS conference

Effective comparative analysis of protein-protein interaction networks by measuring the steady-state network flow using a Markov model

CC-PROMISE effectively integrates two forms of molecular data with multiple biologically related endpoints

Phylogenetic tree construction using trinucleotide usage profile (TUP)

Application of dynamic topic models to toxicogenomics data

Abrupt skin lesion border cutoff measurement for malignancy detection in dermoscopy images

Successful classification of cocaine dependence using brain imaging: a generalizable machine learning approach

Proceedings of the 2016 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference

Incorporating topological information for predicting robust cancer subnetwork markers in human protein-protein interaction network

Prioritization, clustering and functional annotation of MicroRNAs using latent semantic indexing of MEDLINE abstracts

Analysis of optimal alignments unfolds aligners’ bias in existing variant profiles

PGen: large-scale genomic variations analysis workflow and browser in SoyKB

Dissecting the biological relationship between TCGA miRNA and mRNA sequencing data using MMiRNA-Viewer

Leveraging graph topology and semantic context for pharmacovigilance through twitter-streams

Improving sensitivity of linear regression-based cell type-specific differential expression deconvolution with per-gene vs. global significance threshold

VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements

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Volume 17, supplement issue 13, October 2016

Proceedings of the 13th Annual MCBIOS conference

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