Volume 15, supplement issue 10, December 2014
UT-KBRIN Bioinformatics Summit 2014: Abstracts
- Issue editors
-
- Eric C Rouchka
- Julia H Chariker
37 articles in this issue
-
-
CLIP-EZ: a computational tool for HITS-CLIP data analysis
Authors
- Xue Zhong
- Qi Liu
- Yu Shyr
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P1
-
Automating deployment of several GBrowse instances
Authors (first, second and last of 5)
- Neil Moore
- Jerzy W Jaromczyk
- Devin Wright
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P2
-
Genome wide analysis of sex difference in gene expression profiles of bone formations
Authors (first, second and last of 8)
- Yue Huang
- Xiaodong Zhu
- Weikuan Gu
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P3
-
Screening genome-wide DNA methylation CpG sites via training and testing data utilizing surrogate variables
Authors (first, second and last of 4)
- Meredith Ray
- Xin Tong
- Wilfred Karmaus
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P4
-
Transcriptomic characterization of short duration endoplasmic reticulum stress on cultured human proximal tubule cells
Authors (first, second and last of 7)
- Yan Zhang
- Michelle Barati
- Michael Merchant
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P5
-
Obnet: Network of semantic associations for obesity
Authors (first, second and last of 4)
- Hossein Taghizad
- Mohammad Yeasin
- Vida Abedi
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P6
-
Prioritizing disease-related genes and pathways by integrating patient-specific iPSC-derived RNA-seq and whole genome sequencing in hypoplastic left heart syndrome
Authors (first, second and last of 7)
- Xing Li
- Almudena Martinez-Fernandez
- Timothy J Nelson
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P7
-
Context-sensitive use of bioinformatics tools with complementary functionalities for generation of relevant hypothesis
Authors
- Vida Abedi
- Mohammed Yeasin
- Ramin Zand
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P8
-
Comparing genetic pathways variation of immunoinhibitory receptor LAIR-1 in murine vs human internal organs
Authors (first, second and last of 6)
- Shuqiu Sun
- Yan Jiao
- Dianjun Sun
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P9
-
Analysis of effect of congenic mice on the gene expression under genomic background of BALB/c mice
Authors (first, second and last of 8)
- Yan Jiao
- Xiaoyun Liu
- Weikuan Gu
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P10
-
UTR extension and alternate polyadenylation in neuroplasticity: an emerging paradigm?
Authors (first, second and last of 5)
- Benjamin J Harrison
- Robert M Flight
- Jeffrey C Petruska
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P11
-
Ttn as a likely causal gene for QTL of alcohol preference on mouse chromosome 2
Authors (first, second and last of 11)
- Lishi Wang
- Yan Jiao
- Weikuan Gu
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P12
-
Identifying candidate genes for variation in sleep-related quantitative traits
Authors
- Shreyas Joshi
- Bruce O'Hara
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P13
-
Development of sparse Bayesian multinomial generalized linear model for multi-class prediction
Authors
- Behrouz Madahian
- Lih Y Deng
- Ramin Homayouni
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P14
-
Parameter estimations of sigmoidal models of cancer
Authors
- Ferhan M Atici
- Mustafa Atici
- Ngoc Nguyen
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P15
-
Heatmap3: an improved heatmap package with more powerful and convenient features
Authors (first, second and last of 4)
- Shilin Zhao
- Yan Guo
- Yu Shyr
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P16
-
Building a knowledge base to assist clinical decision-making using the Pediatric Research Database (PRD) and machine learning: a case study on pediatric asthma patients
Authors (first, second and last of 4)
- Naga Nagisetty
- Eunice Y Huang
- Teeradache Viangteeravat
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P17
-
Differences in gene expression profiles between individual islets from case #6213
Authors (first, second and last of 4)
- Nataliya I Lenchik
- Hao Chen
- Ivan C Gerling
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P18
-
Exploiting the bootstrap method to analyze patterns of gene expression
Authors
- Nam S Vo
- Vinhthuy Phan
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P19
-
Identification of gene expression profiles associated with prognostic groups of patients with Merkel cell carcinoma
Authors
- Vinay Raj
- Susan Kadlubar
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P20
-
Transcriptome profile of OVCAR3 cisplatin-resistant ovarian cancer cell line
Authors (first, second and last of 4)
- Shruti S Sakhare
- Gautam G Rao
- Siddharth Pratap
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P21
-
A distributed framework for aligning short reads to genomes
Authors
- Shanshan Guo
- Vinthuy Phan
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P22
-
Alignment of short reads to multiple genomes using hashing
Authors
- Quang Tran
- Vinhthuy Phan
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P23
-
Determining gene response patterns of time series gene expression data using R
Authors
- Kevin L O’kello
- Vinhthuy Phan
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P24
-
An adaptive landscape for training in the essentials of next gen sequencing data acquisition and bioinformatic analysis
Authors (first, second and last of 7)
- Mark Farman
- Patrick Calie
- Chris Schardl
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P25
-
Evaluating statistical learning methods for cell type classification and feature selection using RNA-seq data
Authors
- Hao Chen
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P26
-
Establishing a protocol for single cell transcriptome sequencing of the rat brain
Authors
- Hao Chen
- Burt M Sharp
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P27
-
Gene expression signature in adipose tissue of acromegaly patients
Authors (first, second and last of 6)
- Irit Hochberg
- Quynh T Tran
- Dave Bridges
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P28
-
A new set-valued system identification approach to identifying rare genetic variants for ordered categorical phenotype
Authors (first, second and last of 7)
- Wenjian Bi
- Guolian Kang
- Ji-Feng Zhang
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P29
-
An integrated approach for SNP calling based on population of genomes
Authors
- Nam S Vo
- Quang Tran
- Vinhthuy Phan
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P30
-
Coordination characterization of zinc metalloproteins
Authors
- Sen Yao
- Robert M Flight
- Hunter NB Moseley
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P31
-
Algorithmic tools for tripartite data analysis
Authors (first, second and last of 4)
- Charles A Phillips
- Erich J Baker
- Michael A Langston
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P32
-
Evaluating four major algorithms for identifying differential regulators in condition-specific transcriptional responses
Authors
- Hui Yu
- Zhongming Zhao
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P33
-
Evaluation of two-step iterative resampling procedure for internal validation of genome-wide association studies
Authors (first, second and last of 10)
- Guolian Kang
- Wei Liu
- Kumar Srivastava
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P34
-
Shotgun proteomic analysis of human head and neck squamous cell carcinoma cell line SQ20B with diminished AHSG expression
Authors (first, second and last of 7)
- Georgina Iyamu
- Pamela Thompson
- Dana Marshall
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P35
-
Development of large-scale metabolite identification methods for metabolomics
Authors (first, second and last of 4)
- Joshua M Mitchell
- Teresa W-M Fan
- Hunter NB Moseley
- Content type: Poster presentation
- Open Access
- Published: 29 September 2014
- Article: P36