Volume 14, supplement issue 5, April 2013

Proceedings of the Third Annual RECOMB Satellite Workshop on Massively Parallel Sequencing (RECOMB-seq 2013)

Issue editors

Haixu Tang
Tao Jiang
Xuegong Zhang

18 articles in this issue

Discovering motifs that induce sequencing errors

Authors (first, second and last of 6)
- Manuel Allhoff
- Alexander Schönhuth
- Tobias Marschall
- Content type: Proceedings
- Open Access
- Published: 10 April 2013
- Article: S1
metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences

Authors (first, second and last of 4)
- Christina Ander
- Ole B Schulz-Trieglaff
- Anthony J Cox
- Content type: Proceedings
- Open Access
- Published: 10 April 2013
- Article: S2
Joint genotype inference with germline and somatic mutations

Authors (first, second and last of 7)
- Eric Bareke
- Virginie Saillour
- Miklós Csűrös
- Content type: Proceedings
- Open Access
- Published: 10 April 2013
- Article: S3
Discovering and mapping chromatin states using a tree hidden Markov model

Authors
- Jacob Biesinger
- Yuanfeng Wang
- Xiaohui Xie
- Content type: Proceedings
- Open Access
- Published: 10 April 2013
- Article: S4
Prioritization of candidate disease genes by topological similarity between disease and protein diffusion profiles

Authors (first, second and last of 5)
- Jie Zhu
- Yufang Qin
- Xiaoqi Zheng
- Content type: Proceedings
- Open Access
- Published: 10 April 2013
- Article: S5
Bellerophon: a hybrid method for detecting interchromo-somal rearrangements at base pair resolution using next-generation sequencing data

Authors
- Matthew Hayes
- Jing Li
- Content type: Proceedings
- Open Access
- Published: 10 April 2013
- Article: S6
De Bruijn Superwalk with Multiplicities Problem is NP-hard

Authors
- Evgeny Kapun
- Fedor Tsarev
- Content type: Proceedings
- Open Access
- Published: 10 April 2013
- Article: S7
A random-permutations-based approach to fast read alignment

Authors
- Roy Lederman
- Content type: Proceedings
- Open Access
- Published: 10 April 2013
- Article: S8
Assembling contigs in draft genomes using reversals and block-interchanges

Authors
- Chi-Long Li
- Kun-Tze Chen
- Chin Lung Lu
- Content type: Proceedings
- Open Access
- Published: 10 April 2013
- Article: S9
An optimized algorithm for detecting and annotating regional differential methylation

Authors (first, second and last of 11)
- Sheng Li
- Francine E Garrett-Bakelman
- Christopher E Mason
- Content type: Proceedings
- Open Access
- Published: 10 April 2013
- Article: S10
A mixture model for expression deconvolution from RNA-seq in heterogeneous tissues

Authors
- Yi Li
- Xiaohui Xie
- Content type: Proceedings
- Open Access
- Published: 10 April 2013
- Article: S11
Gene prediction in metagenomic fragments based on the SVM algorithm

Authors (first, second and last of 4)
- Yongchu Liu
- Jiangtao Guo
- Huaiqiu Zhu
- Content type: Proceedings
- Open Access
- Published: 10 April 2013
- Article: S12
Evaluating genome architecture of a complex region via generalized bipartite matching

Authors (first, second and last of 4)
- Christine Lo
- Sangwoo Kim
- Vineet Bafna
- Content type: Proceedings
- Open Access
- Published: 10 April 2013
- Article: S13
CLASS: constrained transcript assembly of RNA-seq reads

Authors
- Li Song
- Liliana Florea
- Content type: Proceedings
- Open Access
- Published: 10 April 2013
- Article: S14
A novel min-cost flow method for estimating transcript expression with RNA-Seq

Authors (first, second and last of 4)
- Alexandru I Tomescu
- Anna Kuosmanen
- Veli Mäkinen
- Content type: Proceedings
- Open Access
- Published: 10 April 2013
- Article: S15
Gene set enrichment analysis of RNA-Seq data: integrating differential expression and splicing

Authors
- Xi Wang
- Murray J Cairns
- Content type: Proceedings
- Open Access
- Published: 10 April 2013
- Article: S16
De novo inference of stratification and local admixture in sequencing studies

Authors
- Yu Zhang
- Content type: Proceedings
- Open Access
- Published: 10 April 2013
- Article: S17
Optimal assembly for high throughput shotgun sequencing

Authors
- Guy Bresler
- Ma'ayan Bresler
- David Tse
- Content type: Proceedings
- Open Access
- Published: 09 July 2013
- Article: S18

Volume 14, supplement issue 5, April 2013

Proceedings of the Third Annual RECOMB Satellite Workshop on Massively Parallel Sequencing (RECOMB-seq 2013)

Discovering motifs that induce sequencing errors

metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences

Joint genotype inference with germline and somatic mutations

Discovering and mapping chromatin states using a tree hidden Markov model

Prioritization of candidate disease genes by topological similarity between disease and protein diffusion profiles

Bellerophon: a hybrid method for detecting interchromo-somal rearrangements at base pair resolution using next-generation sequencing data

De Bruijn Superwalk with Multiplicities Problem is NP-hard

A random-permutations-based approach to fast read alignment

Assembling contigs in draft genomes using reversals and block-interchanges

An optimized algorithm for detecting and annotating regional differential methylation

A mixture model for expression deconvolution from RNA-seq in heterogeneous tissues

Gene prediction in metagenomic fragments based on the SVM algorithm

Evaluating genome architecture of a complex region via generalized bipartite matching

CLASS: constrained transcript assembly of RNA-seq reads

A novel min-cost flow method for estimating transcript expression with RNA-Seq

Gene set enrichment analysis of RNA-Seq data: integrating differential expression and splicing

De novo inference of stratification and local admixture in sequencing studies

Optimal assembly for high throughput shotgun sequencing

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Volume 14, supplement issue 5, April 2013

Proceedings of the Third Annual RECOMB Satellite Workshop on Massively Parallel Sequencing (RECOMB-seq 2013)

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