Volume 11, supplement issue 4, July 2010

UT-ORNL-KBRIN Bioinformatics Summit 2010

Issue editors

Eric C Rouchka
Robert M Flight
Claire Rinehart

40 articles in this issue

Proceedings of the ninth annual UT-ORNL-KBRIN Bioinformatics Summit 2010

Authors
- Eric C Rouchka
- Robert M Flight
- Claire Rinehart
- Content type: Introduction
- Open Access
- Published: 23 July 2010
- Article: I1
Pathway- and network-based analysis of GWAS data revealed susceptibility gene sets to schizophrenia

Authors
- Peilin Jia
- Zhongming Zhao
- Content type: Oral presentation
- Open Access
- Published: 23 July 2010
- Article: O1
Subsystems-based servers for rapid annotation of genomes and metagenomes

Authors
- Ramy Karam Aziz
- Content type: Oral presentation
- Open Access
- Published: 23 July 2010
- Article: O2
Genomic analysis of a rare human tumor

Authors (first, second and last of 34)
- Steven JM Jones
- Janessa Laskin
- Marco A Marra
- Content type: Oral presentation
- Open Access
- Published: 23 July 2010
- Article: O3
Association of genomewide newborn DNA methylation patterns with maternal and newborn characteristics

Authors (first, second and last of 6)
- Ronald M Adkins
- Julia Krushkal
- Grant Somes
- Content type: Oral presentation
- Open Access
- Published: 23 July 2010
- Article: O4
Inferring gene coexpression networks for low dose ionizing radiation using graph theoretical algorithms and systems genetics

Authors (first, second and last of 9)
- Sudhir Naswa
- Gary L Rogers Jr.
- Michael A Langston
- Content type: Oral presentation
- Open Access
- Published: 23 July 2010
- Article: O5
Integrating experimental and computational approaches for the proteogenomic characterizations of microbial communities

Authors (first, second and last of 6)
- Robert L Hettich
- Alison L Russell
- Janet K Jansson
- Content type: Oral presentation
- Open Access
- Published: 23 July 2010
- Article: O6
High-throughput sequencing of the DBA/2J mouse genome

Authors (first, second and last of 15)
- Xusheng Wang
- Richa Agarwala
- Robert W Williams
- Content type: Oral presentation
- Open Access
- Published: 23 July 2010
- Article: O7
Analysis of equine protein-coding gene structure and expression by RNA-sequencing

Authors (first, second and last of 4)
- Stephen J Coleman
- Zheng Zeng
- James N MacLeod
- Content type: Oral presentation
- Open Access
- Published: 23 July 2010
- Article: O8
Epigenetic control of signaling networks involved in interleukin-18-induced cardiac hypertrophy and its attenuation by pan-histone deacetylase inhibitors

Authors
- Gipsy Majumdar
- Rajendra Raghow
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P1
Identifying potential drugs that induce QT prolongation using electronic medical records

Authors (first, second and last of 6)
- Mei Liu
- Joshua C Denny
- Hua Xu
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P2
Molecular analysis of Trypanosoma cruzi isolates obtained from raccoons in Warren and Barren counties of Kentucky

Authors
- LiPeng Bi
- Chad Groce
- Cheryl Davis
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P3
SNPlotz: a generic genome plot tool to aid the SNP association studies

Authors (first, second and last of 4)
- Zhi-Liang Hu
- Rex Fernando
- James M Reecy
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P4
Slim-Prim: an integrated data system for clinical and translational research

Authors (first, second and last of 8)
- Teeradache Viangteeravat
- Ian M Brooks
- Chanchai S McDonald
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P5
Phylotree – a toolkit for computing experiments with distance-based methods for genome coevolution

Authors (first, second and last of 5)
- Elissaveta Arnaoudova
- Jerzy W Jaromczyk
- Ruriko Yoshida
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P6
Comparative functional genomic study of substrate specificity evolution of the SABATH family of methyltransferases in plants

Authors (first, second and last of 4)
- Nan Zhao
- Jean-Luc Ferrer
- Feng Chen
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P7
In silico analysis of a family of extracellular polysaccharide deacetylases involved in virulence of pathogenic gram-positive cocci

Authors
- Ramy Karam Aziz
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P8
Experimenting with database segmentation size vs time performance for mpiBLAST on an IBM HS21 blade cluster

Authors
- Daniel Harris
- Jerzy W Jaromczyk
- Christopher L Schardl
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P9
WebGestalt2: an updated and expanded version of the Web-based Gene Set Analysis Toolkit

Authors
- Dexter Duncan
- Naresh Prodduturi
- Bing Zhang
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P10
Bioinformatic analysis of gene regulation in the metal-reducing bacterial family Geobacteraceae

Authors (first, second and last of 11)
- Julia Krushkal
- Ronald M Adkins
- Derek R Lovley
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P11
Integrating neighbor clustering, coexpression clustering and subsystems analysis to define dynamic changes in regulatory networks associated with group A streptococcal sociomicrobiology and niche adaptation

Authors (first, second and last of 7)
- Ramy K Aziz
- Bruce J Aronow
- Malak Kotb
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P12
Pleiotropy of tumor necrosis factor-α in C2C12 myotubes: in vitro studies on genes, networks and pathways involved in TNF-α induced skeletal muscle atrophy

Authors (first, second and last of 4)
- Shephali Bhatnagar
- Siva K Panguluri
- Ashok Kumar
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P13
Developing measures for microbial genome assembly quality control

Authors (first, second and last of 6)
- Rachel M Adams
- Jason B Harris
- Loren J Hauser
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P14
Sequence and annotation of the Wizard007 mycobacterium phage genome

Authors (first, second and last of 17)
- Ejike Anyanwu
- Kaitlyn Cole
- Cynthia Tope
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P15
Next-gen sequencing of multi-drug resistant Acinetobacter baumannii to determine antibiotic resistance genotypes

Authors (first, second and last of 4)
- Leon Dent
- Dana Marshall
- Siddharth Pratap
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P16
A Bayesian change-point algorithm for detecting copy number alteration

Authors
- Fridtjof Thomas
- Stanley Pounds
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P17
A two-step approach to qPCR experimental design and software for data analysis

Authors (first, second and last of 4)
- Huazhang Guo
- Larry Tague
- Gabor Tigyi
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P18
Linking genotype to phenotype with Bayesian network modeling of Chlamydia infection

Authors (first, second and last of 4)
- Jesse D Ziebarth
- Bao Li
- Yan Cui
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P19
The HHMI National Genomics Research Initiative at Western Kentucky University

Authors
- Rodney A King
- Claire Rinehart
- Prasanna Tamarapu Parthasarathy
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P20
Graph algorithms for machine learning: a case-control study based on prostate cancer populations and high throughput transcriptomic data

Authors
- Gary L Rogers
- Pablo Moscato
- Michael A Langston
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P21
Understanding molecular recognition and epitope prediction from Information Theoretic approach

Authors
- Indranil Mitra
- Yan Cui
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P22
Application of Pearson correlation coefficient (PCC) and Kolmogorov-Smirnov distance (KSD) metrics to identify disease-specific biomarker genes

Authors
- Hung-Chung Huang
- Siyuan Zheng
- Zhongming Zhao
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P23
Serendipitous discoveries in microarray analysis

Authors (first, second and last of 7)
- Sally R Ellingson
- Charles A Phillips
- Michael A Langston
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P24
The UofL Microarray Facility: merger and new location

Authors (first, second and last of 6)
- S Waigel
- Xiaohong Li
- Wolfgang Zacharias
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P25
Growth hormone induces proliferation in the zebrafish inner ear

Authors (first, second and last of 4)
- Michael E Smith
- Huifang Sun
- Shunsuke Moriyama
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P26
Development of tools for the automated analysis of spectra generated by tandem mass spectrometry

Authors (first, second and last of 5)
- Sally Ellingson
- Joe Hughes
- Nathan VerBerkmoes
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P27
Do pathogenic bacteria encode more secreted proteins than their non-pathogenic relatives?

Authors
- Ahmed Abo-Bakr Mahmoud
- Ramy Karam Aziz
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P28
Enabling proteomics-based identification of human cancer variations

Authors (first, second and last of 6)
- Jing Li
- Zeqiang Ma
- Bing Zhang
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P29
Statistical analysis of multiple significance test methods for differential proteomics

Authors (first, second and last of 6)
- Bing Wang
- Fahim Mohammad
- Xiang Zhang
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P30
Design of a DNA-based shift register

Authors
- Christy M Gearheart
- Eric C Rouchka
- Benjamin Arazi
- Content type: Poster presentation
- Open Access
- Published: 23 July 2010
- Article: P31

Volume 11, supplement issue 4, July 2010

UT-ORNL-KBRIN Bioinformatics Summit 2010

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