1. Through a genome, darkly: comparative analysis of plant chromosomal DNA

   • Graham J. King

   OriginalPaper Pages: 5 - 20

2. Plant genome evolution: lessons from comparative genomics at the DNA level

   • Renate Schmidt

   OriginalPaper Pages: 21 - 37

3. Computational gene finding in plants

   • Mihaela Pertea
   • Steven L. Salzberg

   OriginalPaper Pages: 39 - 48

4. Computational modeling of gene structure in Arabidopsis thaliana

   • Volker Brendel
   • Wei Zhu

   OriginalPaper Pages: 49 - 58

5. Surviving in a sea of data: a survey of plant genome data resources and issues in building data management systems

   • Leonore Reiser
   • Lukas A. Mueller
   • Seung Yon Rhee

   OriginalPaper Pages: 59 - 74

6. Comprehensive gene expression analysis by transcript profiling

   • Jonathan Donson
   • Yiwen Fang
   • Wayne Volkmuth

   OriginalPaper Pages: 75 - 97

7. DNA microarrays for functional plant genomics

   • Asaph Aharoni
   • Oscar Vorst

   OriginalPaper Pages: 99 - 118

8. Microarray data quality analysis: lessons from the AFGC project

   • David Finkelstein
   • Rob Ewing
   • Shauna Somerville

   OriginalPaper Pages: 119 - 132

9. Large-scale plant proteomics

   • Birgit Kersten
   • Lukas Bürkle
   • Ulrich Schneider

   OriginalPaper Pages: 133 - 141

10. Proteomics and a future generation of plant molecular biologists

    • Justin K.M. Roberts

    OriginalPaper Pages: 143 - 154

11. Metabolomics – the link between genotypes and phenotypes

    • Oliver Fiehn

    OriginalPaper Pages: 155 - 171

12. Gene replacement by homologous recombination in plants

    • Holger Puchta

    OriginalPaper Pages: 173 - 182

13. Recombinase-directed plant transformation for the post-genomic era

    • David W. Ow

    OriginalPaper Pages: 183 - 200