Volume 10, Issue 2

June 2011

Special issue "Petri Nets for Systems and Synthetic Biology, Part I: Bridging Gaps" Part II: Special issue "Computing with Biomolecules"

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19 articles in this issue

Preface: Petri nets for Systems and Synthetic Biology
Monika Heiner
EditorialNotes 19 April 2011 Pages: 633 - 638
Petri nets as a framework for the reconstruction and analysis of signal transduction pathways and regulatory networks
Wolfgang Marwan
Annegret Wagler
Robert Weismantel
OriginalPaper 19 September 2009 Pages: 639 - 654
The combinatorics of modeling and analyzing biological systems
Annegret K. Wagler
Robert Weismantel
OriginalPaper 27 November 2009 Pages: 655 - 681
A Petri net representation of Bayesian message flows: importance of Bayesian networks for biological applications
Kurt Lautenbach
Alexander Pinl
OriginalPaper 21 June 2009 Pages: 683 - 709
Error-correcting Petri nets
Anastasia Pagnoni
OriginalPaper 26 August 2009 Pages: 711 - 725
Petri net representation of multi-valued logical regulatory graphs
C. Chaouiya
A. Naldi
D. Thieffry
OriginalPaper 21 February 2010 Pages: 727 - 750
Boundedness analysis for open Chemical Reaction Networks with mass-action kinetics
David Angeli
OriginalPaper 29 October 2009 Pages: 751 - 774
Editorial: Computing with biomolecules
Erzsébet Csuhaj-Varjú
Kai Salomaa
EditorialNotes 22 February 2011 Pages: 775 - 776
Mutual mobile membranes with objects on surface
Bogdan Aman
Gabriel Ciobanu
OriginalPaper 25 February 2011 Pages: 777 - 793
Theoretical and computational properties of transpositions
Mark Daley
Ian McQuillan
Kalpana Mahalingam
OriginalPaper 10 July 2010 Pages: 795 - 804
Algorithmic applications of XPCR
Giuditta Franco
Vincenzo Manca
OriginalPaper 28 April 2010 Pages: 805 - 819
(Tissue) P systems working in the k-restricted minimally or maximally parallel transition mode
Rudolf Freund
Sergey Verlan
OriginalPaper 13 October 2010 Pages: 821 - 833
Computational power of insertion–deletion (P) systems with rules of size two
Alexander Krassovitskiy
Yurii Rogozhin
Sergey Verlan
OriginalPaper 13 July 2010 Pages: 835 - 852
Self-assembly of decidable sets
Matthew J. Patitz
Scott M. Summers
OriginalPaper 14 September 2010 Pages: 853 - 877
A software tool for generating graphics by means of P systems
Elena Rivero-Gil
Miguel Á. Gutiérrez-Naranjo
Agustín Riscos-Núñez
OriginalPaper 14 April 2010 Pages: 879 - 890
Evolutionary computation approaches to the Curriculum Sequencing problem
Sarab Al-Muhaideb
Mohamed El Bachir Menai
ReviewPaper 01 January 2011 Pages: 891 - 920
Electrostatic field framework for supervised and semi-supervised learning from incomplete data
Marcin Budka
Bogdan Gabrys
OriginalPaper 17 February 2010 Pages: 921 - 945
Padlock probe-mediated qRT-PCR for DNA computing answer determination
Fusheng Xiong
Wayne D. Frasch
OriginalPaper 16 November 2010 Pages: 947 - 959
Graph multiset transformation: a new framework for massively parallel computation inspired by DNA computing
Hans-Jörg Kreowski
Sabine Kuske
OriginalPaper 11 January 2011 Pages: 961 - 986

Volume 10, Issue 2

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