Skip to main content

Advertisement

Log in

Nuclear localization of the mitochondrial ncRNAs in normal and cancer cells

  • Original Paper
  • Published:
Cellular Oncology Aims and scope Submit manuscript

Abstract

Background

We have previously shown a differential expression of a family of mitochondrial ncRNAs in normal and cancer cells. Normal proliferating cells and cancer cells express the sense mitochondrial ncRNA (SncmtRNA). In addition, while normal proliferating cells express two antisense mitochondrial ncRNAs (ASncmtRNAs-1 and −2), these transcripts seem to be universally down-regulated in cancer cells. In situ hybridization (ISH) of some normal and cancer tissues reveals nuclear localization of these transcripts suggesting that they are exported from mitochondria.

Methods

FISH and confocal microscopy, in situ digestion with RNase previous to ISH and electron microscopy ISH was employed to confirm the extra-mitochondrial localization of the SncmtRNA and the ASncmtRNAs in normal proliferating and cancer cells of human and mouse.

Results

In normal human kidney and mouse testis the SncmtRNA and the ASncmtRNAs were found outside the organelle and especially localized in the nucleus associated to heterochromatin. In cancer cells, only the SncmtRNA was expressed and was found associated to heterochromatin and nucleoli.

Conclusion

The ubiquitous localization of these mitochondrial transcripts in the nucleus suggests that they are new players in the mitochondrial-nuclear communication pathway or retrograde signaling. Down regulation of the ASncmtRNAs seems to be an important step on neoplastic transformation and cancer progression.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6

Similar content being viewed by others

References

  1. O. Warburg, On respiratory impairment in cancer cells. Science 124, 269–270 (1956)

    PubMed  CAS  Google Scholar 

  2. J.S. Carew, P. Huang, Mitochondrial defects in cancer. Mol Cancer 1, 1–9 (2002)

    Article  Google Scholar 

  3. D.C. Wallace, W.W. Fan, The pathophysiology of mitochondrial disease as modeled in the mouse. Genes Dev 23, 1714–1736 (2009)

    Article  PubMed  CAS  Google Scholar 

  4. G. Biswas, O.A. Adebanjo, B.D. Freedman, H.K. Anandatheerthavarada, C. Vijayasarathy, M. Zaidi, M. Kotlikoff, N.G. Avadhani, Retrograde Ca2+ signaling in C2C12 skeletal myocytes in response to mitochondrial genetic and metabolic stress: a novel mode of inter-organelle crosstalk. EMBO J 18, 522–533 (1999)

    Article  PubMed  CAS  Google Scholar 

  5. G. Biswas, H.K. Anandatheerthavarada, N.G. Avadhani, Mechanism of mitochondrial stress-induced resistance to apoptosis in mitochondrial DNA-depleted C2C12 myocytes. Cell Death Differ 12, 266–278 (2005)

    Article  PubMed  CAS  Google Scholar 

  6. G. Amuthan, G. Biswas, S.Y. Zhang, A. Klein-Szanto, C. Vijayasarathy, N.G. Avadhani, Mitochondria-to-nucleus stress signaling induces phenotypic changes, tumor progression and cell invasion. EMBO J 20, 1910–1920 (2001)

    Article  PubMed  CAS  Google Scholar 

  7. G. Amuthan, G. Biswas, H.K. Ananadatheerthavarada, C. Vijayasarathy, H.M. Shephard, N.G. Avadhani, Mitochondrial stress-induced calcium signaling, phenotypic changes and invasive behavior in human lung carcinoma A549 cells. Oncogene 21, 7839–7849 (2002)

    Article  PubMed  CAS  Google Scholar 

  8. R.A. Butow, N.G. Avadhani, Mitochondrial signaling: the retrograde response. Mol. Cell 14, 1–15 (2004)

    Article  PubMed  CAS  Google Scholar 

  9. Z. Liu, R.A. Butow, Mitochondrial retrograde signaling. Annu Rev Genet 40, 159–185 (2006)

    Article  PubMed  CAS  Google Scholar 

  10. M.T. Ryan, N.J. Hoogenraad, Mitochondrial-nuclear communications. Ann Rev Biochem 76, 701–722 (2007)

    Article  PubMed  CAS  Google Scholar 

  11. G. Biswas, H.K. Anandatheerthavarada, M. Zaidi, N.G. Avadhani, Mitochondria to nucleus stress signaling: a distinctive mechanism of NFkappaB/Rel activation through calcineurin-mediated inactivation of IkappaBbeta. J Cell Biol 161, 507–519 (2003)

    Article  PubMed  CAS  Google Scholar 

  12. M. Guha, S. Srinivasan, G. Biswas, N.G. Avadhani, Activation of a novel calcineurin-mediated insulin-like growth factor-1 receptor pathway, altered metabolism, and tumor cell invasion in cells subjected to mitochondrial respiratory stress. J Biol Chem 282, 14536–14546 (2007)

    Article  PubMed  CAS  Google Scholar 

  13. S.M. Schieke, T. Finkel, Mitochondrial signaling, TOR and life span. Biol Chem 387, 1357–1361 (2006)

    Article  PubMed  CAS  Google Scholar 

  14. G. Biswas, S. Srinivasan, H.K. Anandatheerthavarada, N.G. Avadhani, Dioxin-mediated tumor progression through activation of mitochondria-to-nucleus stress signaling. Proc Natl Acad Sci U S A 105, 186–191 (2008)

    Article  PubMed  CAS  Google Scholar 

  15. J. Villegas, V.A. Burzio, C. Villota, E. Landerer, R. Martinez, R. Pinto, M.I. Vera, J. Castillo, L.O. Burzio, Expression of a novel non-coding mitochondrial RNA in human proliferating cells. Nucleic Acids Res 35, 7336–7347 (2007)

    Article  PubMed  CAS  Google Scholar 

  16. V. Burzio, C. Villota, J. Villegas, E. Landerer, E. Boccardo, L.L. Villa, R. Martinez, C. Lopez, F. Gaete, V. Toro, X. Rodriguez, L.O. Burzio, Expression of a family of noncoding mitocondrial RNAs distinguishes normal from cancer cells. Proc Natl Acad Sci, USA 106, 9430–9434 (2009)

    Article  PubMed  CAS  Google Scholar 

  17. N.D. Bonawitz, D.A. Clayton, G.S. Shadel, Initiation and beyond: multiple functions of the human mitochondrial transcription machinery. Mol Cell 24, 813–825 (2006)

    Article  PubMed  CAS  Google Scholar 

  18. M. Falkenberg, N.G. Larsson, C.M. Gustafsson, DNA replication and transcription in mammalian mitochondria. Ann Rev Biochem 76(30), 1–30 (2007)

    Google Scholar 

  19. B. Goic, J. Bustamante, A. Miquel, M. Alvarez, M.I. Vera, P.D. Valenzuela, L.O. Burzio, The nucleoprotein and the viral RNA of infectious salmon anemia virus (ISAV) are localized in the nucleolus of infected cells. Virology 379, 55–63 (2008)

    Article  PubMed  CAS  Google Scholar 

  20. S. Kobayashi, R. Amikura, M. Okada, Presence of mitochondrial large ribosomal RNA outside mitochondria in germ plasm of Drosophila melanogaster. Science 260, 1521–1524 (1993)

    Article  PubMed  CAS  Google Scholar 

  21. F.J. Iborra, D.A. Jackson, P.R. Cook, The path of RNA through nuclear pores: apparent entry from the sides into specialized pores. J Cell Sci 113, 291–302 (2000)

    PubMed  CAS  Google Scholar 

  22. D. Cmarko, S.O. Bøe, C. Scassellati, A.M. Szilvay, S. Davanger, X.D. Fu, G. Haukenes, K.H. Kalland, S. Fakan, Rev inhibition strongly affects intracellular distribution of human immunodeficiency virus type 1 RNAs. J Virol 76(2002), 10473–10484 (2002)

    Article  PubMed  CAS  Google Scholar 

  23. R. Gelfand, G. Attardi, Synthesis and turnover of mitochondrial ribonucleic acid in HeLa cells: the mature ribosomal and messenger ribonucleic acid species are metabolically unstable. Mol Cell Biol 1, 497–511 (1981)

    PubMed  CAS  Google Scholar 

  24. R.S. Puranam, G. Attardi, The RNase P associated with HeLa cell mitochondria contains an essential RNA component identical in sequence to that of the nuclear RNase P. Mol Cell Biol 21, 548–561 (2001)

    Article  PubMed  CAS  Google Scholar 

  25. G. Wang, H.W. Chen, Y. Oktay, J. Zhang, E.L. Allen, G.M. Smith, K.C. Fan, J.S. Hong, S.W. French, J.M. McCaffery, R.N. Lightowlers, H.C. Morse, C.M. Kehler, M.A. Teitell, PNPASE regulates RNA import into mitochondria. Cell 142, 456–467 (2010)

    Article  PubMed  CAS  Google Scholar 

  26. M.P. King, G. Attardi, Human cells lacking mtDNA: repopulation with exogenous mitochondria by complementation. Science 246, 500–503 (1989)

    Article  PubMed  CAS  Google Scholar 

  27. T. Hayakawa, M. Noda, K. Yasuda, H. Yorifuji, S. Taniguchi, I. Miwa, H. Sakura, Y. Terauchi, J. Hayashi, G.W. Sharp, Y. Kanazawa, Y. Akanuma, Y. Yazaki, T. Kadowaki, Ethidium bromide-induced inhibition of mitochondrial gene transcription suppresses glucose-stimulated insulin release in the mouse pancreatic b-cell line bHC9. J Biol Chem 273, 20300–20307 (1998)

    Article  PubMed  CAS  Google Scholar 

  28. J.E. Sligh, S.E. Levy, K.G. Waymire, P. Allard, D.L. Dillehay, S. Nusinowitz, J.R. Heckenlively, G.R. MacGregor, D.C. Wallace, Maternal germ-line transmission of mutant mtDNAs from embryonic stem cell-derived chimeric mice. Proc Natl Acad, Sci USA 97, 14461–14466 (2000)

    Article  CAS  Google Scholar 

  29. Q. Felty, K.P. Singh, D. Roy, Estrogen-induced G1/S transition of G0 arrested estrogen-dependent breast cancer cells is regulated by mitochondrial oxidant signaling. Oncogene 24, 4883–4893 (2005)

    Article  PubMed  CAS  Google Scholar 

  30. A. Rego, P.B. Sinclair, W. Tao, I. Kireev, A.S. Belmont, The facultative heterochromatin of the inactive X chromosome has a distinctive condensed ultrastructure. J Cell Sci 121, 1119–1127 (2008)

    Article  PubMed  CAS  Google Scholar 

  31. A. Chacinska, C.M. Koehler, D. Milenkovic, T. Lithgow, N. Pfanner, Importing mitochondrial proteins: machineries and mechanisms. Cell 138, 628–644 (2009)

    Article  PubMed  CAS  Google Scholar 

  32. D.J. Pagliarini, S.E. Calvo, B. Chang, S.A. Sheth, S.B. Vafai, S.E. Ong, G.A. Walford, C. Sugiana, A. Boneh, W.K. Chen, D.E. Hill, M. Vidal, J.G. Evans, D.R. Thorburn, S.A. Carr, V.K. Mootha, A mitochondrial protein compendium elucidates complex I disease biology. Cell 134, 112–123 (2008)

    Article  PubMed  CAS  Google Scholar 

  33. J.D. Alfonzo, D. Söll, Mitochondrial tRNA import–the challenge to understand has just begun. Biol Chem 390, 717–722 (2009)

    Article  PubMed  CAS  Google Scholar 

  34. A. Smirnov, C. Comte, A.-M. Mager-Heckel, V. Addis, I.A. Krasheninnikov, R.P. Martin, E. Entelis, I. Tarassov, Mitochondrial enzyme rhodanese is essential for 5 S ribosomal RNA import into human mitochondria. J Biol Chem 285(2010), 30792–30803 (2010)

    Article  PubMed  CAS  Google Scholar 

  35. B.T. Kren, P.Y. Wong, A. Sarver, X. Zhang, Y. Zeng, C.J. Steer, MicroRNAs identified in highly purified liver-derived mitochondria may play a role in apoptosis. RNA Biol 6, 65–72 (2009)

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgments

We thank Mr. Alejandro Munizaga, Pontificia Universidad Catolica de Chile, for his excellent help on the electron microscopy analysis of the samples. This work was supported by Millennium Scientific Initiative N° P-77-09 F, Grants DI-34-09/R, DI-31-09/R and DI-28-09/R4, Universidad Andrés Bello, Grant D04I1338, Fondef, Grant 1085210 and Grant 11090060, Fondecyt and the CCTE-PFB16 Program, Conicyt, Chile

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Luis O. Burzio.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Landerer, E., Villegas, J., Burzio, V.A. et al. Nuclear localization of the mitochondrial ncRNAs in normal and cancer cells. Cell Oncol. 34, 297–305 (2011). https://doi.org/10.1007/s13402-011-0018-8

Download citation

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s13402-011-0018-8

Keywords

Navigation