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Higher incidence of the SNP Met 788 Ile in the coding region of A20 in diffuse large B cell lymphomas

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Tumor Biology

Abstract

Genetic alterations causing constitutive activation of the nuclear factor kappa B (NF-κB) signaling pathway has been associated with the development of lymphomas. A20 (TNFAIP3) is a key regulator of NF-κB signaling. Its suppressor functions are often inactivated by deletions and/or mutations in various hematologic malignancies. Since we recently found the rs143002189 polymorphism in the A20 loci in our multiple myeloma samples, we further investigated this polymorphism in different lymphoid neoplasias. For this purpose, we tested 479 cases of the most common B cell malignancies for the presence of the rs143002189 polymorphism. We found a significant higher occurrence of the rs143002189 polymorphism in diffuse large B cell lymphoma (DLBCL) compared to non-neoplastic controls and other types of B cell malignancies. Furthermore, structure analyses of the mutated A20 protein led to the assumption that the new steric interaction within the protein is responsible for a reduced or inactivated A20 protein. Our data indicates that in a significant fraction of patients, rs143002189 might contribute to the development of DLBCL.

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References

  1. Campo E, Swerdlow SH, Harris NL, Pileri S, Stein H, Jaffe ES. The 2008 WHO classification of lymphoid neoplasms and beyond: evolving concepts and practical applications. Blood. 2011;117(19):5019–32. doi:10.1182/blood-2011-01-293050.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  2. Jaffe ES, Harris NL, Stein H, Vardiman JW. World Health Organisation classification of tumors: pathology and genetics of tumors of haematopoietic and lymphoid tissues. Lyon: IARC Press; 2001.

    Google Scholar 

  3. Armitage JO, Weisenburger DD. New approach to classifying non-Hodgkin’s lymphomas: clinical features of the major histologic subtypes. Non-Hodgkin’s Lymphoma Classification Project. J Clin Oncol. 1998;16(8):2780–95.

    Article  CAS  PubMed  Google Scholar 

  4. Lossos IS, Morgensztern D. Prognostic biomarkers in diffuse large B-cell lymphoma. J Clin Oncol. 2006;24(6):995–1007.

    Article  CAS  PubMed  Google Scholar 

  5. Sehn LH, Donaldson J, Chhanabhai M, et al. Introduction of combined CHOP plus rituximab therapy dramatically improved outcome of diffuse large B-cell lymphoma in British Columbia. J Clin Oncol. 2005;23(22):5027–33.

    Article  CAS  PubMed  Google Scholar 

  6. Friedberg JW. New strategies in diffuse large B-cell lymphoma: translating findings from gene expression analyses into clinical practice. Clin Cancer Res. 2011;17(19):6112–7.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  7. Compagno M, Lim WK, Grunn A, et al. Mutations of multiple genes cause deregulation of NF-kappaB in diffuse large B-cell lymphoma. Nature. 2009;459(7247):717–21.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  8. Rinaldi A, Rancoita PMV, Bhagat G, et al. Array-CGH identifies both common and subtype-specific genomic aberrations in marginal zone lymphomas. ASH Ann Meet Abstr. 2008;112:622.

    Google Scholar 

  9. Kato M, Sanada M, Kato I, et al. Frequent inactivation of A20 in B-cell lymphomas. Nature. 2009;459(7247):712–6.

    Article  CAS  PubMed  Google Scholar 

  10. Novak U, Rinaldi A, Kwee I, et al. The NF-{kappa}B negative regulator TNFAIP3 (A20) is inactivated by somatic mutations and genomic deletions in marginal zone lymphomas. Blood. 2009;113(20):4918–21.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Schmitz R, Hansmann ML, Bohle V, et al. TNFAIP3 (A20) is a tumor suppressor gene in Hodgkin lymphoma and primary mediastinal B cell lymphoma. J Exp Med. 2009;206(5):981–9.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Troppan K, Hofer S, Wenzl K, et al. Frequent Down Regulation of the Tumor Suppressor Gene A20 in Multiple Myeloma. Waisman A, editors. PLoS ONE. 2015;10(4):e0123922. doi:10.1371/journal.pone.0123922.

  13. Hans CP, Weisenburger DD, Greiner TC, et al. Confirmation of the molecular classification of diffuse large B-cell lymphoma by immunohistochemistry using a tissue microarray. Blood. 2004;103(1):275–82. doi:10.1182/blood-2003-05-1545.

    Article  CAS  PubMed  Google Scholar 

  14. Sussman JL, Lin D, Jiang J, et al. Protein Data Bank (PDB): database of three-dimensional structural information of biological macromolecules. Acta Crystallogr D Biol Crystallogr. 1998;54(Pt 6 Pt 1):1078–84.

    Article  CAS  PubMed  Google Scholar 

  15. Jensen F. Introduction to computational chemistry. UK: John Wiley&Sons Ltd; 2007.

    Google Scholar 

  16. Wiltgen M. Structural bioinformatics: from the sequence to structure and function. CURR Bioinforma. 2009;4(1):54–87.

    Article  CAS  Google Scholar 

  17. Deutsch AJ, Aigelsreiter A, Steinbauer E, et al. Distinct signatures of B-cell homeostatic and activation-dependent chemokine receptors in the development and progression of extragastric MALT lymphomas. J Pathol. 2008;215(4):431–44.

    Article  CAS  PubMed  Google Scholar 

  18. Chanudet E, Huang Y, Ichimura K, et al. A20 is targeted by promoter methylation, deletion and inactivating mutation in MALT lymphoma. Leukemia. 2010;24:483–7.

    Article  CAS  PubMed  Google Scholar 

  19. Thelander EF, Ichimura K, Corcoran M, et al. Characterization of 6q deletions in mature B cell lymphomas and childhood acute lymphoblastic leukemia. Leuk Lymphoma. 2008;49:477–87.

    Article  CAS  PubMed  Google Scholar 

  20. Braggio E, Keats JJ, Leleu X, et al. Identification of copy number abnormalities and inactivating mutations in two negative regulators of nuclear factor-kappaB signaling pathways in Waldenstrom’s macroglobulinemia. Cancer Res. 2009;69:3579–88.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  21. Honma K, Tsuzuki S, Nakagawa M, et al. TNFAIP3/A20 functions as a novel tumor suppressor gene in several subtypes of non-Hodgkin lymphomas. Blood. 2009;114:2467–75.

    Article  CAS  PubMed  Google Scholar 

  22. Kim WS, Honma K, Karnan S, et al. Genome-wide array-based comparative genomic hybridization of ocular marginal zone B cell lymphoma: comparison with pulmonary and nodal marginal zone B cell lymphoma. Genes Chromosom Cancer. 2007;46:776–83.

    Article  CAS  PubMed  Google Scholar 

  23. Braggio E, Dogan A, Keats JJ, et al. Genomic analysis of marginal zone and lymphoplasmacytic lymphomas identified common and disease-specific abnormalities. Mod Pathol. 2012;25(5):651–60. doi:10.1038/modpathol.2011.213.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  24. Hymowitz SG, Wertz IE. A20: from ubiquitin editing to tumour suppression. Nat Rev Cancer. 2010;10(5):332–41. doi:10.1038/nrc2775.

    Article  CAS  PubMed  Google Scholar 

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Acknowledgments

This work was supported by grants from the Fellinger Krebsforschung, Land Steiermark, Hygienefond, and Jubilaeumsfond der OENB and by the START-Funding-Program of the Medical University of Graz and the City of Graz. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

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Correspondence to Alexander Deutsch.

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Kerstin Wenzl, Sybille Hofer, Katharina Troppan, Peter Neumeister and Alexander Deutsch contributed equally to this work.

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Wenzl, K., Hofer, S., Troppan, K. et al. Higher incidence of the SNP Met 788 Ile in the coding region of A20 in diffuse large B cell lymphomas. Tumor Biol. 37, 4785–4789 (2016). https://doi.org/10.1007/s13277-015-4322-1

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  • DOI: https://doi.org/10.1007/s13277-015-4322-1

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