Abstract
With the increasing growth of the herbal market, a rapid and easy-to-use system is highly desirable in the high-throughput identification of massive herbal medicine samples. Here, an ultrafast and colorimetric detection system was devised based on simplifying template preparation and a newly developed amplification technique, named colorimetric direct-VPCR. The system was successfully applied to the identification of Pinelliae Rhizoma. Compared to the traditional method, the whole test can be finished within 30 min from the sample treatment to the testing results. The method was evaluated by correctly identifying 72 samples obtained from 9 different habitats, demonstrating its high reliability. In summary, we present an ultrafast (less than 30 min) and colorimetric detection platform (under ultraviolet lamp) based on direct-VPCR for the identification of Pinelliae Rhizoma. The high practicability (100% accuracy) of this pipeline enables it to be a promising method in the routine detection of other herbal materials.
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References
Chen R et al (2012) DNA based identification of medicinal materials in Chinese patent medicines. Sci Rep 2:958. https://doi.org/10.1038/srep00958
Chen R et al (2019) Polymerase chain reaction using “V” shape thermal cycling program. Theranostics 9:1572–1579. https://doi.org/10.7150/thno.31986
Choudhary P, Das S, Chakdar H, Singh A, Goswami SK, Saxena AK (2019) Rapid high throughput template preparation (rHTTP) method: a novel cost effective method of direct PCR for a wide range of plants. BMC Biotechnol 19:69. https://doi.org/10.1186/s12896-019-0560-4
Coutinho Moraes DF, Still DW, Lum MR, Hirsch AM (2015) DNA-based authentication of botanicals and plant-derived dietary supplements: where have we been and where are we going? Planta Med 81:687–695. https://doi.org/10.1055/s-0035-1545843
Farrar JS, Wittwer CT (2015) Extreme PCR: efficient and specific DNA amplification in 15–60 seconds. Clin Chem 61:145–153. https://doi.org/10.1373/clinchem.2014.228304
Li T-J, Chang C-M, Chang P-Y, Chuang Y-C, Huang C-C, Su W-C, Shieh D-B (2016) Handheld energy-efficient magneto-optical real-time quantitative PCR device for target DNA enrichment and quantification. Npg asIa Mater. https://doi.org/10.1038/am.2016.70
Mishra P, Kumar A, Nagireddy A, Mani DN, Shukla AK, Tiwari R, Sundaresan V (2016) DNA barcoding: an efficient tool to overcome authentication challenges in the herbal market. Plant Biotechnol J 14:8–21. https://doi.org/10.1111/pbi.12419
Moreira PA, Oliveira DA (2011) Leaf age affects the quality of DNA extracted from Dimorphandra mollis (Fabaceae), a tropical tree species from the Cerrado region of Brazil. Gen Mol Res 10:353–358. https://doi.org/10.4238/vol10-1gmr1030
Son JH, Cho B, Hong S, Lee SH, Hoxha O, Haack AJ, Lee LP (2015) Ultrafast photonic PCR. Light Sci Appl 4:e280. https://doi.org/10.1038/lsa.2015.53
Sun F, Chen Y, Wang K-Y, Wang S-M, Liang S-W (2019) Identification of genuine and adulterated pinellia ternata by mid-infrared (MIR) and near-infrared (NIR) spectroscopy with partial least squares - discriminant analysis (PLS-DA). Anal Lett. https://doi.org/10.1080/00032719.2019.1687507
Svec D, Andersson D, Pekny M, Sjoback R, Kubista M, Stahlberg A (2013) Direct cell lysis for single-cell gene expression profiling. Front Oncol 3:274–274. https://doi.org/10.3389/fonc.2013.00274
Wang XH, Xiao HL, Chen GX, Zhao X, Huang CH, Chen CY, Wang F (2011) Isolation of high-quality RNA from Reaumuria soongorica, a desert plant rich in secondary metabolites. Mol Biotechnol 48:165–172. https://doi.org/10.1007/s12033-010-9357-3
Yip CCY et al (2019) Evaluation of RealStar (R) alpha herpesvirus PCR kit for detection of HSV-1, HSV-2, and VZV in clinical specimens. Biomed Res Int. https://doi.org/10.1155/2019/5715180
Zhang XM et al (2018) Development and evaluation of a PCR-based assay kit for authentication of Zaocys dhumnades in traditional Chinese medicine. Mitochondrial DNA Part A 29:102–106. https://doi.org/10.1080/24701394.2016.1248429
Funding
This work was supported by the National Natural Science Foundation of China [Grant number 81973434], Health Commission of Sichuan Province [Grant number 20PJ165], Xinglin Scholar Research Premotion Project of Chengdu University of TCM [Grant number 18TD0017].
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Chen, R., Ding, S., Wei, Y. et al. Ultrafast identification of Pinelliae Rhizoma using colorimetric direct-VPCR. 3 Biotech 11, 493 (2021). https://doi.org/10.1007/s13205-021-03035-9
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DOI: https://doi.org/10.1007/s13205-021-03035-9