Abstract
Knowledge on the extent and pattern of diversity in crop species is a precondition for any crop improvement as it helps breeders in determining apt breeding approaches. The genetic diversity of 49 tef genotypes (36 improved varieties, 10 farmers’ varieties, 3 elite lines) and 2 wild relatives was investigated using nine SSR markers. A total of 52 alleles were amplified with a mean of six alleles per locus, and mean polymorphic information content and gene diversity values of 0.69 and 0.73, respectively. The analysis of molecular variance showed higher percentage of variation within individuals (60%) and the variation among groups was the least (10%).The lowest pair-wise genetic differentiation and highest gene flow were observed among the varieties obtained through hybridization and direct selection. Genetic distance analysis showed the smallest (GD=0.101) between varieties from direct selection and hybridization and the largest (GD= 0.454) between wild Eragrostis accessions and cultivated tef accessions. The dendrogram based on the cluster analysis grouped the tested genotypes into three major clusters. PCoA showed that the first three most informative principal coordinates accounted 29% of the genetic variation. In summary, the farmer’s varieties are distant from the improved varieties and represent more genetic diversity. This finding is of interest to national breeding program to use the farmer’s material as a source of genetic variation for traits of interest. Similarly, wild relatives showed highest genetic distance however, further investigation is required in order to identify useful genes controlling agro-morphological characters.
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References
Abraha M T, H Shimelis 2016. Assessment of the genetic relationship of tef (Eragrostis tef) genotypes using SSR markers. South African J. of Botany 105: 106–110
Adnew T, Ketema S, Tefera H, Sridhara H. 2005. Genetic diversity in tef [Eragrostis tef (Zucc.) Trotter] germplasm. Genetic Resources and Crop Evolution 52: 891–902
Amelework B, Shimelis H, Tongoona P, Laing M, Mengistu F. 2015. Genetic variation in lowland sorghum (Sorghum bicolor (L.) Moench) landraces assessed by simple sequence repeats. Plant Genetic Resources 13: 131–141
Assefa K, Ketema S, Tefera H, Nguyen H T, Blum A, Ayele M, Bai G, Simane B, Kefyalew T. 1999. Diversity among germplasm lines of the Ethiopian cereal tef [Eragrostis tef (Zucc.) Trotter]. Euphytica 106: 87–97
Assefa K, Ketema S, Tefera H, Kefyalew T, Hundera F. 2000. Trait diversity, heritability and genetic advance in selected germplasm lines of tef [Eragrostis tef (Zucc.) Trotter]. Hereditas 133: 29–37
Assefa K, Merker A, Tefera H. 2003a. Inter simple sequence repeat (ISSR) analysis of genetic diversity in tef [Eragrostis tef (Zucc.) Trotter]. Hereditas 139: 174–183
Ayele M, Dolezel J, van Duren M, Brunner H, Zapata–Arias F J. 1996. Flow cytometric analysis of nuclear genome of the Ethiopian cereal Tef [Eragrostis tef (Zucc.) Trotter]. Genetica 98: 211–215
Ayele M, Tefera H, Assefa K, Nguyen H T. 1999. Genetic characterization of two Eragrostis species using AFLP and morphological traits. Hereditas 130: 33–40
Bai G H, Ayele M, Tefera H, Nguyen H T. 2000. Genetic diversity in tef [Eragrostis tef (Zucc) Trotter] and its relatives as revealed by random amplified polymorphic DNAs. Euphytica 112: 15–22
Baraket G, Chatti K, Saddoud O, Ben–Abdelkarim A, Mars M, Trifi M, Hannachi A. 2011. Comparative assessment of SSR and AFLP markers for evaluation of genetic diversity and conservation of fig (Ficuscarica L.) genetic resources in Tunisia. Plant Mol. Biol. Rep. 29: 171–184
Borsch T, Hilu KW, Quandt D, Wilde V, Neinhuis C, Barthlott W. 2004. Non–coding plastid trnT–trnF sequences reveal a well resolved phylogeny of basal angiosperms. J. Evol. Biol. 16: 558–576
Botstein D, White RL, Skolnick M, Davis RW. 1980 Construction of a genetic linkage map in man using RFLPs. Am. J. of Human Genet. 32(3): 314–331
Chanyalew S. 2007 Phenotypic Evaluation and Molecular Study of Parents and Recombinant Inbred Lines of Tef [Eragrostis tef (Zucc.) Trotter]. PhD Thesis. Haramaya University, Haramya
CSA. 2016. Central Statistics Agency. Agricultural Sample Survey. Report on Area Production and Yield of Major Crops (Private Peasant Holdings. Meher Season). Addis Ababa
He Q, Li XW, Liang GL et al. 2011. Genetic diversity and identity of Chinese loquat cultivars/accessions (Eriobotrya japonica) using apple SSR markers. Plant Mol. Biol. Rep. 29: 197–208
Ketema S. 1993. Tef (Eragrostis tef): Breeding, Genetic Resources, Agronomy, Utilization and Role in Ethiopian Agriculture. Institute of Agricultural Research, Addis Ababa
Ketema S. 1997. Tef: [Eragrostis tef (Zucc.) Trotter]: Promoting the Conservation and Use of Underutilized and Neglected Crops. Institute of Plant Genetics and Crop Plant Research, Gatersleben/International Plant Genetic Resources Institute, Rome, Italy, p. 12
Kong Q, Li X, Xiang C et al. 2011. Genetic diversity of radish (Raphanussativus L.) germplasm resource revealed by A FL P and RA PD markers. Plant Mol. Biol. Rep. 29: 217–223
Liu K, Muse SV. 2005. Power Marker: an integrated analysis environment for genetic marker analysis. Bioinformatics 21: 2128–2129
MoA. 2016. Ministry of Agriculture Plant Variety Release, Protection, and Seed Quality Control Directorate, Crop Variety Register No.19. Addis Ababa
Mohan M, Nair S, Bhagwat A, Krishna TG, Yano M, Bhatia CR, Sasaki T. 1997. Genome mapping, molecular markers and marker–assisted selection in crop plants. Mol Breed. 3: 87–103
Peakall R, Smouse P E. 2006. GENAlEX 6: genetic analysis in excel. Population Genetics Software for Teaching and Research Mol. Ecol. Notes 6: 288–295
Perrier X, Jacquemoud–Collet JP. 2006. DARwin Software. http://darwi n.ci rad.fr/
Plaza–Wuthrich S, Cannarozzi G, Tadele Z. 2013. Genetic and phenotypic diversity in selected genotypes of tef [Eragrostis tef (Zucc.) Trotter. Afri. J. of Agri. Res. 8: 1041–1049
Saeed A, Hovsepyan H, Darvishzadeh R et al. 2011. Genetic Diversity of Iranian accessions, improved lines of Chickpea (Cicerarietinum L.) and their wild relatives by using simple sequence repeats. Plant Mol. Biol. Rep. 29: 848–858
Sharma SS, Negi M S, Sinha P, Kumar K, Tripathi S B. 2011. Assessment of genetic diversity of biodiesel species Pongamiapinnata accession using AFLP and three endonuclease–AFLP. Plant Mol. Biol. Rep. 29: 12–18
Soller M and Beckmann J S. 1983. Genetic polymorphism in varietal identification and genetic improvement. Theor. Appl. Genet. 67: 25–33
Tautz D. 1989. Hyper variability of simple sequences as a general source for polymorphic DNA markers. Nucleic Acids Res. 17: 6463–6471
Vavilov NI. 1951. The Origin, Variation, Immunity and Breeding of Cultivated Plants (translated from Russian by K. Star Chester).The Ronald Press Co, New York, pp 37–38
Warburton M, Crossa J. 2002. Data analysis in the CIMMYT Applied Biotechnology Center: For finger printing and genetic diversity studies. CIMMYT, Mexico
Wright, S. 1951. The genetical structure of populations. Annals of Eugenics 15: 323–354
Zeid M, Belay G, Mulkey S, Poland J, Sorrells M.E. 2011. QTL mapping for yield and lodging resistance in an enhanced SSR–based map for tef. Theor. Appl. Genet. 122: 77–93
Zeid M, Assefa K, Haddis A, Chanyalew S, Sorrells ME. 2012. Genetic diversity in tef [Eragrostis tef (Zucc.)Trotter] using SSR markers. Field Crops Res. 127: 64–70
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Fikre, T., Tesfaye, K. & Assefa, K. Genetic Diversity of Ethiopian Tef [(Eragrostis tef (Zucc.) Trotter] Released and Selected Farmers’ Varieties along with Two Wild Relatives as Revealed by Microsatellite Markers. J. Crop Sci. Biotechnol. 21, 367–374 (2018). https://doi.org/10.1007/s12892-018-0066-0
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DOI: https://doi.org/10.1007/s12892-018-0066-0