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Characterization of the complete chloroplast genome of longstalk almond (Prunus pedunculata (Pall.) Maxim.), an important sand-fixation shrub plant endemic to northern China

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Abstract

The Prunus pedunculata is a precious plant native to the north of China. In this study, its complete chloroplast genome was determined through Illumina sequencing method. The circular genome was 157,873 bp in length and contained two inverted repeat regions of 26,385 bp each. The complete chloroplast genome of P. pedunculata encoded 131 genes including 87 protein-coding genes, 36 tRNA genes and 8 rRNA genes. The overall GC content of P. pedunculata complete chloroplast genome is 36.78%. Phylogenetic analysis showed that P. pedunculata is closely related to the mountain cherry (Prunus tomentosa).

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References

  • Chau CF, Wu SH (2006) The development of regulations of Chinese herbal medicines for both medicinal and food uses. Trends Food Sci Technol 17(6):313–323

    Article  CAS  Google Scholar 

  • Doyle J (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19(1):11–15

    Google Scholar 

  • Feng Y, Liu T, Wang XY, Li BB, Liang CL, Cai YL (2017) Characterization of the complete chloroplast genome of the Chinese cherry Prunus pseudocerasus (Rosaceae). Conserv Genet Resour. https://doi.org/10.1007/s12686-017-0770-9

    Article  Google Scholar 

  • Katoh K, Standley DM (2013) MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol 30(4):772–780

    Article  CAS  Google Scholar 

  • Lohse M, Drechsel O, Kahlau S, Bock R (2013) OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets. Nucleic Acids Res 41:W575-W581

    Article  Google Scholar 

  • Luan A, Gao A, He J, Bi G, He Y (2017) Characterization of the complete chloroplast genome of black cherry (Prunus serotina Ehrh.). Conserv Genet Resour. https://doi.org/10.1007/s12686-017-0826-x

    Article  Google Scholar 

  • Luo R, Liu B, Xie Y, Li Z, Huang W, Yuan J, He G, Chen Y, Pan Q, Liu Y, Tang J, Wu G, Zhang H, Shi Y, Liu Y, Yu C, Wang B, Lu Y, Han C, Cheung DW, Yiu SM, Peng S, Xiaoqian Z, Liu G, Liao X, Li Y, Yang H, Wang J, Lam TW, Wang J (2015) SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. GigaScience 4(1):1

    Article  Google Scholar 

  • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28(10):2731–2739

    Article  CAS  Google Scholar 

  • Wyman SK, Jansen RK, Boore JL (2004) Automatic annotation of organellar genomes with DOGMA. Bioinformatics 20(17):3252–3255

    Article  CAS  Google Scholar 

  • Xu X, Wen J, Wang W, Zheng W (2017) The complete chloroplast genome of the threatened Prunus cerasoides, a rare winter blooming cherry in the Himalayan region. Conserv Genet Resour. https://doi.org/10.1007/s12686-017-0859-1

    Article  Google Scholar 

Download references

Acknowledgements

This work was supported by the National Natural Science Foundation of China (41501059), the Fundamental Research Funds for the Central Non-profit Research Institution of CAF (CAFYBB2016QB004, CAFYBB2017ZA004-7) and the National Science and Technology Program for Public Wellbeing (2012GS610203).

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Correspondence to Xin-Qiao Xu.

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Wang, W., Wang, HL., Xiao, XZ. et al. Characterization of the complete chloroplast genome of longstalk almond (Prunus pedunculata (Pall.) Maxim.), an important sand-fixation shrub plant endemic to northern China. Conservation Genet Resour 11, 419–421 (2019). https://doi.org/10.1007/s12686-018-1039-7

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