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The completed chloroplast genome of Ostrya trichocarpa

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Abstract

The whole chloroplast genome nucleotide sequence of Ostrya trichocarpa has been characterized from Illumina pair-end sequencing. The completed genome is 159,122 bp in length, with 121 genes annotated, including 86 protein-coding, 29 tRNA and 6 rRNA genes. The majority of gene occurred as a single copy, while 14 gene species occur in two copies. The circular genome exhibits a typical chloroplast genome structure comprising a large single copy region of 88,158 bp, a small single copy region of 18,758 bp and a pair of inverted repeats of 26,103 and 26,106 bp. The overall AT content of O. trichocarpa chloroplast genome is 63.54%, while the corresponding values of the LSC, SSC and IR regions are 65.73, 62.81 and 60.95%, respectively. Based on the SSR analysis, a total of 85 microsatellites with a length of at least 10 bp were detected in the O. trichocarpa genome. Further, phylogenetic analysis suggested that O. trichocarpa is closely related to Ostrya rehderiana.

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Acknowledgements

This study was financially supported by grants from the Fundamental Research Funds for the Central Universities (lzujbky-2016-k04); the Fok Ying Tung Education Foundation (151105).

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Authors and Affiliations

  1. State Key Laboratory of Grassland Agro-Ecosystem, College of Life Science, Lanzhou University, Lanzhou, China

    Mingcheng Wang, Xiuyue Xie, Biyao Yan, Xiaoting Yan, Jiayu Luo, Yanbin Liu & Qiang Qiu

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  1. Mingcheng Wang
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  2. Xiuyue Xie
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  3. Biyao Yan
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  4. Xiaoting Yan
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  5. Jiayu Luo
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  6. Yanbin Liu
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  7. Qiang Qiu
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Correspondence to Qiang Qiu.

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Wang, M., Xie, X., Yan, B. et al. The completed chloroplast genome of Ostrya trichocarpa . Conservation Genet Resour 10, 579–581 (2018). https://doi.org/10.1007/s12686-017-0869-z

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