Skip to main content
Log in

The complete chloroplast genome sequence of the wild Chinese chestnut (Castanea mollissima)

  • Technical Note
  • Published:
Conservation Genetics Resources Aims and scope Submit manuscript

Abstract

The complete chloroplast genome sequence of a wild chestnut species, Castanea mollissima Blume, was determined and mapped based on Illumina sequencing data. The complete chloroplast genome is 160,869 bp and comprises a pair of inverted repeat regions of 25,701 bp each, a large single-copy region of 90,497 bp, and a small single-copy region of 18,970 bp. The genome harbors 131 genes, including 86 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. Phylogenetic analysis based on chloroplast genomes indicates that wild C. mollissima is closely related to Castanopsis echinocarpa and dissimilar to cultivated C. mollissima.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3

References

  • Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215(3):403–410

    Article  PubMed  CAS  Google Scholar 

  • Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV (2012) SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 19:455–477

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Cheng L, Huang W (2009) Diversity of chloroplast DNA SSRs in wild and cultivated C. mollissima: evidence of cultivated C. mollissima origin. Eur Congr Chestnut Castanea 866:243–249

    Google Scholar 

  • Cheng L, Feng H, Rao Q, Wu W, Zhou M, Hu G, Huang W (2012) Diversity of wild chestnut chloroplast DNA SSRs in Shiyan. J Fruit Sci 3:382–386

    Google Scholar 

  • Huang W, Cheng L, Zhou Z, Liu J (2009) Diversity of chloroplast DNA SSRs in the wild and cultivated chestnuts (Castanea mollissima). Sci Silv Sin 45(10):62–68

    CAS  Google Scholar 

  • Liu W, Kang M, Tian H, Huang H (2013) A range wide geographic pattern of genetic diversity and population structure of Castanea mollissima populations inferred from nuclear and chloroplast microsatellites. Tree Genet Genom 9(4):975–987

    Article  Google Scholar 

  • Luo R, Liu B, Xie Y, Li Z, Huang W, Yuan J, He G, Chen Y, Pan Q, Liu Y, Tang J, Wu G, Zhang H, Shi Y, Liu Y, Yu C, Wang B, Lu Y, Han C, Cheung DW, Yiu SM, Peng S, Zhu X, Liu G, Liao X, Li Y, Yang H, Wang J, Lam TW, Wang J (2012) SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. Gigascience 1(1):1

    Article  Google Scholar 

  • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729. doi:10.1093/molbev/mst197

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Wyman SK, Jansen RK, Boore JL (2004) Automatic annotation of organellar genomes with DOGMA. Bioinformatics 20:3252–3255

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgements

This work was financially supported by the 12th Five-Year National Science and technology plan (Grant No. 2013BAD14B0402-1), Beijing Talents Training Program (Grant No. 2014000020060G179), Special Fund for the Construction of Scientific and Technological Innovation Capability (Grant No. KJCX20170111) and the Young Foundation of Beijing Academy of Agriculture and Forestry Sciences (Grant No. QNJJ201703).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Guanglong Hu.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Cheng, L., Huang, W., Lan, Y. et al. The complete chloroplast genome sequence of the wild Chinese chestnut (Castanea mollissima). Conservation Genet Resour 10, 291–294 (2018). https://doi.org/10.1007/s12686-017-0805-2

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s12686-017-0805-2

Keywords

Navigation