Abstract
The complete chloroplast genome of Lilium taliense which is a rare and endangered species native to China was determined in this study. The chloroplast genome is 153,055 bp long and consists of a pair of inverted repeat regions (26,543 bp), one large single copy region (82,458 bp), and one small single copy region (17,511 bp). The genome contains 132 genes, including 86 protein-coding genes, 38 transfer RNA gens and eight ribosomal RNA genes. In addition, 188 simple sequence repeats (SSRs) were identified in the L. taliense chloroplast genome. Maximum likelihood phylogenetic analysis with the reported chloroplast genomes revealed that L. taliense was closely related to L. fargesii and L. superbum.
References
Bi Y, Du YP, Chen XQ, Yang FP, Xue J, Zhang XH (2016) The complete chloroplast genome sequence of Lilium fargesii (Lilium, Liliaceae). Conserv Genet Resour. doi:10.1007/s12686-016-0585-0
Clegg MT, Gaut BS, Learn GH, Morton BR (1994) Rates and patterns of chloroplast DNA evolution. Proc Natl Acad Sci USA 91: 6795–6801
Du YP, He HB, Wang ZX, Wei C, Li S, Jia GX (2014) Investigation and evaluation of the genus Lilium resources. Genet Resour Crop Evol. doi:10.1007/s10722-013-0045-6
Liang SY, Tamura MN (2000) Lilium Linnaeus vol 24. Flora of China. Science Press, Beijing
Lohse M, Drechsel O, Kahlau S, Bock R (2013) OrganellarGenomeDRAW–a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets. Nucleic Acids Res 41:W575–W581. doi:10.1093/nar/gkt289
Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: Molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30(12):2725–2729. doi:10.1093/molbev/mst197
Wyman SK, Jansen RK, Boore JL (2004) Automatic annotation oforganellar genomes with DOGMA. Bioinformatics 20:3252–3255. doi:10.1093/bioinformatics/bth352
Acknowledgements
This work was supported by the National Natural Science Foundation of China (Project No.31601781) and Beijing Municipal Science and Technology Project (Z161100000916004). We express our gratitude to Prof Shiliang Zhou and Dr. Wenpan Dong for providing technical assistance.
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Qian Zhang and Yu Bi contributed equally to this work.
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Zhang, Q., Bi, Y., Zhang, M. et al. The complete chloroplast genome of Lilium taliense, an endangered species endemic to China. Conservation Genet Resour 9, 201–203 (2017). https://doi.org/10.1007/s12686-016-0650-8
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DOI: https://doi.org/10.1007/s12686-016-0650-8