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The complete chloroplast genome sequence of Lilium fargesii (Lilium, Liliaceae)

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Abstract

Lilium fargesii Franchet is an endangered species endemic to China. In this study, the complete chloroplast genome has been generated from the Next Generation Sequencing. The whole genome is 153,235 bp in length, and includes one large single copy region of 82,217 bp, one small single copy region of 17,038 bp and a pair of inverted repeat region of 26,990 bp. It contains 132 genes, comprising 86 protein-coding genes (78 PCG species), 38 transfer RNA (30 tRNA species) and eight ribosomal RNA genes (four rRNA species). In the maximum likelihood tree, all species of Lilium were clustered into two monophyletic groups with 100 % bootstrap value.

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Acknowledgments

This work was supported by the Natural Science Foundation of Beijing Academy of Agriculture and Forestry Sciences of China (QNJJ201619) and National High Technology Research and Development Program 863 (2013AA102706). We thank Wenpan Dong and Yanlei Liu for their help in assembling and annotating chloroplast genome.

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    Authors and Affiliations

    1. School of Horticulture, Jilin Agricultural University, No. 2888 Xincheng Street, Changchun, 130000, Jilin Province, People’s Republic of China

      Yu Bi & Ran Dong

    2. Beijing Agro-Biotechnology Research Center, Beijing Academy of Agriculture and Forestry Sciences, No. 9 Shuguang Garden Road Haidian District, Beijing, 100097, People’s Republic of China

      Yu Bi, Yunpeng Du, Xuqing Chen, Fengping Yang, Jing Xue & Xiuhai Zhang

    3. Beijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, No. 9 Shuguang Garden Road Haidian District, Beijing, 100097, People’s Republic of China

      Yu Bi, Yunpeng Du, Xuqing Chen, Fengping Yang, Jing Xue & Xiuhai Zhang

    Authors
    1. Yu Bi
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    2. Yunpeng Du
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    3. Xuqing Chen
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    4. Fengping Yang
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    5. Jing Xue
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    7. Ran Dong
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    Corresponding authors

    Correspondence to Xiuhai Zhang or Ran Dong.

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    Yu Bi and Yunpeng Du have contributed equally to this work.

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    Bi, Y., Du, Y., Chen, X. et al. The complete chloroplast genome sequence of Lilium fargesii (Lilium, Liliaceae). Conservation Genet Resour 8, 419–422 (2016). https://doi.org/10.1007/s12686-016-0585-0

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    • DOI: https://doi.org/10.1007/s12686-016-0585-0

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