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A thin soup: extraction and amplification of DNA from DMSO and ethanol used as preservative for cetacean tissue samples

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Abstract

Two popular tissue preservatives, 100 % ethanol and 20 % salt saturated dimethyl sulfoxide (DMSO) solution were tested for the existence of amplifiable, free-floating DNA after 2–18 years of tissue storage. We found that short mtDNA fragments were consistently amplified and sequenced from DMSO preservative, while nDNA amplification was limited and inconsistent. Amplification of both mtDNA and nDNA failed most of the time for the ethanol samples.

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References

  • Amos W (1997) Marine mammal tissue sample collection and preservation for genetic analyses. In: Dizon AE, Chivers SJ, Perrin WF (eds) Molecular genetics of marine mammals. Society for Marine Mammalogy, Lawrence, KS, pp 107–113

    Google Scholar 

  • Flournoy LE, Adams RP, Pandy RN (1996) Interim and archival preservation of plant specimens in alcohols for DNA studies. Biotechniques 20:657–660

    PubMed  CAS  Google Scholar 

  • Ling JK (1974) The integument of marine mammal. In: Harrison RJ (ed) Functional anatomy of marine mammals, vol 2. Academic Press, London, pp 1–44

    Google Scholar 

  • Martien KK, Baird RW, Hedrick NM, Gorgone AM, Thieleking JL, McSweeney DJ, Robertson KM, Webster DL (2012) Population structure of island-associated dolphins: evidence from mitochondrial and microsatellite markers for common bottlenose dolphins (Tursiops truncatus) around the main Hawaiian Islands. Marine Mammal Science 28:E208–E232

    Article  Google Scholar 

  • Meyer M, Kircher M, Gansauge MT, Li H, Racimo F, Mallick S, Schraiber JG, Jay F, Prüfer K, de Filippo C, et al. (2012). A high-coverage genome sequence from an Archaic Denisovan individual. Science, New York N.Y.

  • Michaud CL, Foran DR (2011) Simplified field preservation of tissues for subsequent DNA analyses. J Forensic Sci 56:846–852

    Article  PubMed  CAS  Google Scholar 

  • Miller SA, Dykes DD, Polesky HF (1988) A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res 16:1215

    Article  PubMed  CAS  Google Scholar 

  • Morin PA, Nestler A, Rubio-Cisneros NT, Robertson KM, Mesnick SL (2005) Interfamilial characterization of a region of the ZFX and ZFY genes facilitates sex determination in cetaceans and other mammals. Mol Ecol 14:3275–3286

    Article  PubMed  CAS  Google Scholar 

  • Morin PA, Hedrick NM, Robertson KM, Leduc CA (2007) Comparative mitochondrial and nuclear quantitative PCR of historical marine mammal tissue, bone, baleen, and tooth samples. Mol Ecol Notes 7:404–411

    Article  CAS  Google Scholar 

  • Shokralla S, Singer GAC, Hajibabaei M (2010) Direct PCR amplification and sequencing of specimens’ DNA from preservative ethanol. Biotechniques 48:233–234

    Article  PubMed  CAS  Google Scholar 

  • Sluetin GB, White N, Boag PT (1991) Preservation of avian blood tissue samples for DNA analyses. Can J Zool 69:82–90

    Article  Google Scholar 

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Acknowledgments

We thank sample contributors, Robin Baird (Cascadia Research Collaborative), SWFSC’s Regional Stranding and Fishery Observer Programs, Chris Gabriele (Glacier Bay National Park) and Paul Wade (NMFS/AKFSC/NMML). Special thanks to Brittany Hanser, Aimee Lang, and William Perrin (SWFSC) and two anonymous reviewers for helpful comments. All samples were collected under NMFS Marine Mammal Permits. Reference to trade names does not imply endorsement by NMFS, NOAA.

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Correspondence to Kelly M. Robertson.

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Robertson, K.M., Minich, J., Bowman, A.J. et al. A thin soup: extraction and amplification of DNA from DMSO and ethanol used as preservative for cetacean tissue samples. Conservation Genet Resour 5, 929–933 (2013). https://doi.org/10.1007/s12686-013-9934-4

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  • DOI: https://doi.org/10.1007/s12686-013-9934-4

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