Skip to main content

Advertisement

Log in

Isolation and characterization of polymorphic microsatellite markers in the fish Garra orientalis (oriental sucking barb)

  • Technical Note
  • Published:
Conservation Genetics Resources Aims and scope Submit manuscript

Abstract

14 Polymorphic microsatellite markers were developed in the Garra orientalis. These new markers were tested in 23 individuals collected from the Wanquan River in the Hainan Island. The number of alleles (NA), polymorphism information content, observed and expected heterozygosity per locus ranged from 8 to 25, 0.6788 to 0.9342, 0.5652 to 1.0000 and 0.7179 to 0.9585, respectively. Four loci are deviated from Hardy–Weinberg equilibrium due to the heterozygote deficiency. These markers can be used to study genetic diversity, population structure, conservation and rational utilization of this species.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

References

  • Brown J, Hardwick LJ, Wright AF (1995) A simple method for rapid isolation of microsatellites from yeast artificial chromosomes. Mol Cell Probes 9:53–58

    Article  PubMed  CAS  Google Scholar 

  • Fu CZ, Wu JH, Chen JK et al (2003) Freshwater fish biodiversity in the Yangtze River basin of China: patterns, threats and conservation. Biodivers Conserv 12:1649–1685

    Article  Google Scholar 

  • Jarne P, Lagoda PJL (1996) Microsatellites, from molecules to populations and back. Trends Ecol Evol 11:424–429

    Article  PubMed  CAS  Google Scholar 

  • Sambrook J, Russell DW (2001) Molecular cloning: a laboratory manual, 3rd edn. Cold Spring Harbor Laboratory Press, New York

    Google Scholar 

  • Sun Y, Lin HD, Tang WQ et al (2011) Polymorphic microsatellite loci isolated from the Squalidus argentatus using PCR-based isolation of microsatellite arrays (PIMA). Int J Mol Sci 12:5666–5671

    Article  PubMed  CAS  Google Scholar 

  • Tian HW, Yue XJ, Chen DQ et al (2012) Estimation of stock biomass and mortality parameters of oriental sucking barb (Garra orientalis) in Nujiang River of Sichuan Province, Southwest China. Chin J Ecol 31:235–240

    Google Scholar 

  • van Oosterhout C, Hutchinson WF, Wills DPM et al (2004) MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4:535–538

    Article  Google Scholar 

  • Wu XW (1982) The cyprinid fishes of China, vol 2. The Science & Technology Press, Shanghai, pp 372–373

    Google Scholar 

  • Yeh FC, Yang R, Boyle T (1999) Microsoft Windows-based free ware for population genetic analysis (Release 1.31). University of Alberta, Edmonton

  • Yue PQ (2000) Fauna sinica, Osteichthyes, Cypriniformes, vol 2. Science Press, Beijing, pp 237–241

    Google Scholar 

Download references

Acknowledgments

This research was supported by the National Natural Science Foundation of China (No. 30800099 and No. 31172066) and Shanghai Leading Academic Discipline Project (No. S30701).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Jin-Quan Yang.

Additional information

Li-Wei Su and Zhi-Zhi Liu contributed equally to this work.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Su, LW., Liu, ZZ., Wang, CT. et al. Isolation and characterization of polymorphic microsatellite markers in the fish Garra orientalis (oriental sucking barb). Conservation Genet Resour 5, 231–233 (2013). https://doi.org/10.1007/s12686-012-9776-5

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s12686-012-9776-5

Keywords

Navigation