Skip to main content

Advertisement

Log in

Isolation and characterization of microsatellite loci for white-lipped peccaries (Tayassu pecari) and cross-amplification in collared peccaries (Pecari tajacu)

  • Technical Note
  • Published:
Conservation Genetics Resources Aims and scope Submit manuscript

Abstract

White-lipped peccaries, Tayassu pecari, are neotropical ungulates whose populations have been declining in numerous locations within their geographical distribution. Here we describe 16 microsatellite loci isolated from T. pecari and their cross-amplification in collared peccaries, Pecari tajacu. In 30 individuals of T. pecari, a total of 32 alleles were found in ten polymorphic loci, ranging from 2 to 8 alleles per locus with a mean of 3.2. The expected and observed heterozygosity ranged from 0.143 to 0.802 and from 0 to 0.704, respectively. Two loci deviated from Hardy–Weinberg equilibrium. In P. tajacu, nine loci were polymorphic with a mean of 3.2 alleles per locus. These molecular markers will be useful to study the genetic status of peccary populations and, consequently, to help their conservation.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

References

  • Beck H, Thebpanya P, Filiaggi M (2010) Do Neotropical peccary species (Tayssuidae) function as ecosystem engineers for anurans? J Trop Ecol 26:407–414

    Article  Google Scholar 

  • Benjamini Y, Yekutieli D (2001) The control of false discovery rate under dependency. Ann Stat 29:1165–1188

    Article  Google Scholar 

  • Boutin-Ganache I, Raposo M, Raymond M, Deschepper CF (2001) M-13 tailed primers improve the readability and usability of microsatellite analyses performed with two different allele-sizing methods. BioTech 31:26–28

    Google Scholar 

  • Desbiez ALJ, Bodmer RE, Tomas WT (2010) Mammalian densities in a Neotropical wetland subject to extreme climatic events. Biotropica 42:372–378

    Article  Google Scholar 

  • Ditt EH (2002) Fragmentos florestais no Pontal do Paranapanema. Annablume Editora/IPÊ/IIEB, São Paulo, Brazil

    Google Scholar 

  • Freitas PD, Martins DS, Galetti PM Jr (2008) CID (Clipping vectors, Identifying SSR, Design of primers): a rapid and efficient bioinformatics tool for the detection of simple sequence repeats (SSRs) from genomic libraries. Mol Ecol Res 8:107–108

    Article  Google Scholar 

  • Galetti M, Giacomini H, Bueno RS, Bernardo CSS, Marques RM, Bovendorp RS, Steffler CE, Rubim P, Gobbo SK, Donatti CI, Begotti RA, Meirelles F, Nobre RA, Chiarello AG, Peres CA (2009) Priority areas for the conservation of Atlantic forest large mammals. Biol Conserv 142:1229–1241

    Article  Google Scholar 

  • Hamilton MB, Pincus EL, Di Fiore A, Fleischer RC (1999) Universal linker and ligation procedures for construction of genomic DNA libraries enriched for microsatellites. BioTech 27:500–507

    CAS  Google Scholar 

  • IUCN (2010) IUCN red list of threatened species. Version 2010.1. www.iucnredlist.org. Downloaded on 25 June 2010

  • Keuroghlian A, Eaton DP (2009) Removal of palm fruits and ecosystem engineering in palm stands by white-lipped peccaries (Tayassu pecari) and other frugivores in an isolated Atlantic Forest fragment. Biodiv Conserv 18:1733–1750

    Article  Google Scholar 

  • Mendes Pontes AR (2004) Ecology of a community of mammals in a seasonally dry forest in Roraima, Brazilian Amazon. Mamm Biol 69:319–336

    Article  Google Scholar 

  • Raymond M, Rousset F (1995) GENEPOP (version 1.2): a population genetic software for exact test and ecumenism. J Hered 86:248–249

    Google Scholar 

  • Reyna-Hurtado R, Taber A, Altrichter M, Fragoso J, Keuroghlian A, Beck H (2008) Tayassu pecari. In: IUCN 2010. IUCN red list of threatened species. Version 2010.1. www.iucnredlist.org. Downloaded on 25 June 2010

  • Rousset F (2008) Genepop 007: a complete reimplementation of the Genepop software for Windows and Linux. Mol Ecol Res 8:103–106

    Article  Google Scholar 

  • Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, New York

    Google Scholar 

  • Sowls LK (1984) The peccaries. The University of Arizona Press, Tucson, Arizona

    Google Scholar 

  • van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4:535–538

    Article  Google Scholar 

Download references

Acknowledgments

We are grateful to Rio Negro Farm and Vale Verde Farm for logistical support and to veterinarian Tatiana P. Freitas, Ezidio Arruda, and Celso Vicente for valuable help in the field work. This project was funded by FAPESP (BIOTA 2007/03392-6), UNIDERP, FMB, IBC, Earthwatch Institute, WCS Brazil, CI, CNPq, and CAPES. MG and PMGJr receive a fellowship from CNPq.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Cibele Biondo.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Vecchia, A.C.D., Biondo, C., Sanches, A. et al. Isolation and characterization of microsatellite loci for white-lipped peccaries (Tayassu pecari) and cross-amplification in collared peccaries (Pecari tajacu). Conservation Genet Resour 3, 151–154 (2011). https://doi.org/10.1007/s12686-010-9311-5

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s12686-010-9311-5

Keywords

Navigation