Abstract
We document the isolation and characterization of novel tetranucleotide microsatellite DNA markers for the invasive silver carp Hypophthalmichthys molitrix and provide the results of cross-species amplification for three additional invasive carp species: bighead (H. nobilis), grass (Ctenopharyngodon idella) and black (Mylopharyngodon piceus). In the target species these markers yielded levels of allelic diversity (average 4.4 alleles/locus) and heterozygosity (average 54.7%) sufficient to: (1) provide unique multilocus genotypes; (2) delineate kinship relationships; (3) differentiate populations/species; (4) estimate effective population sizes; and (5) provide unique demographic perspectives for control or eradication. Currently these markers are being utilized to determine the degree of introgressive hybridization between H. molitrix and H. nobilis, to quantify gene flow between different sub-basins established in the central United States, and to assess the demographic status of sub-basin groups. This information will be critically important in the management/control of these invasive species.
References
Cheng L, Liu L, Yu X, Tong J (2008) Sixteen polymorphic microsatellites in bighead carp (Aristichthys nobilis) and cross-amplification in silver carp (Hypophthalmichthys molitrix). Mol Ecol Resour 8:655–658
Cornuet JM, Luikart G (1996) Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144:2001–2014
Das P, Barat A, Meher PK, Ray PP, Majumdar D (2005) Isolation and characterization of polymorphic microsatellites in Labeo rohita and their cross-species amplification in related species. Mol Ecol Notes 5:231–233
Davies N, Villablanca FX, Roderick GK (1999) Determining the source of individuals: Multilocus genotyping in nonequilibrium population genetics. Trends Ecol Evol 14:17–21
Excoffier L, Laval G, Schneider S (2005) Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evol Bioinform Online 1:47–50
Gheyas AA, Cairney M, Gilmour AE, Sattar MA, Das TK, McAndrew BJ, Penman DJ, Taggart JB (2006) Characterization of microsatellite loci in silver carp (Hypophthalmichthys molitrix), and cross-amplification in other cyprinid species. Mol Ecol Notes 6:656–659
Hammer Ø, Harper DAT, Ryan PD (2001) PAST: paleontological statistics software package for eduction and data analysis. Palaeontol Electron 4(1):9. http://palaeo-electronica.org/2001_1/past/issue1_01.htm
King TL, Eackles MS, Young CC (2006) Microsatellite DNA markers for assessing phylogeographic and population structure in Preble’s meadow jumping mice (Zapus hudsonius preblei) and cross-amplification among neighbouring taxa. Mol Ecol Notes 6:670–673
Lee CE (2002) Evolutionary genetics of invasive species. Trends Ecol Evol 17:386–391
Liao M, Yang G, Wang X, Wang D, Zou G, Wei Q (2007) Development of microsatellite DNA markers of silver carp (Hypophthalmichthys molitrix) and their cross-species application in bighead carp (Aristichthys nobilis). Mol Ecol Notes 7:95–99
Luikart G, Sherwin WB, Steele BM, Allendorf FW (1998) Usefulness of molecular markers for detecting population bottlenecks via monitoring genetic change. Mol Ecol 7:963–974
Mia MY, Taggart JB, Gilmour AE, Gheyas AA, Das TK, Kohinoor AHM, Rahman MA, Sattar MA, Hussain MG, Mazid MA, Penman DJ, McAndrew BJ (2005) Detection of hybridization between Chinese carp species (Hypophthalmichthys molitrix and Aristichthys nobilis) in hatchery broodstock in Bangladesh, using DNA microsatellite loci. Aquaculture 247:267–273
Peacock MM, Kirchoff VS, Merideth SJ (2002) Identification and characterization of nine polymorphic microsatellite loci in the North American pika, Ochotona princeps. Mol Ecol Notes 2:360–362
Piry S, Luikart G, Cornuet J-M (1999) BOTTLENECK: A computer program for detecting recent reductions in the effective population size using allele frequency data. J Hered 90:502–503
Raymond M, Rousset F (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. J Hered 86:248–249
Rice WR (1989) Analyzing tables of statistical tests. Evolution 43:223–225
Taberlet P, Luikart G (1999) Non-invasive genetic sampling and individual identification. Biol J Linn Soc 68:41–55
Tong J, Wang Z, Yu X, Chu KH (2002) Cross-species amplification in silver carp and bighead carp with microsatellite primers of common carp. Mol Ecol Notes 2:245–247
Waples RS (2006) A bias correction for estimates of effective population size based on linkage disequilibrium at unlinked gene loci. Conserv Genet 7:167–184
Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38:1358–1370
Acknowledgments
This research was co-funded by the U.S. Geological Survey’s (USGS) Leetown Science Center, Columbia Environmental Research Center, and the USGS Invasive Species Program. The authors wish to thank Sharon Gross (USGS, Invasive Species Program Coordinator, Reston, Virginia) for supporting this project. We wish to thank Kevin Irons, Illinois Natural History Survey for providing tissue samples from the silver carp and Mike Freeze, Keo Fish Farms, Keo, Arkansas for providing the black carp samples. We would like to thank Cheryl Morrison and John Switzer for reviewing an earlier version of the manuscript.
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King, T.L., Eackles, M.S. & Chapman, D.C. Tools for assessing kinship, population structure, phylogeography, and interspecific hybridization in Asian carps invasive to the Mississippi River, USA: isolation and characterization of novel tetranucleotide microsatellite DNA loci in silver carp Hypophthalmichthys molitrix . Conservation Genet Resour 3, 397–401 (2011). https://doi.org/10.1007/s12686-010-9285-3
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DOI: https://doi.org/10.1007/s12686-010-9285-3