Abstract
Fourteen microsatellites were isolated and characterized from a small-insert genomic DNA library from the leatherback turtle Dermochelys coriacea enriched for dinucleotide microsatellite motifs. We tested primers on 207 leatherbacks sampled from St. Croix, US Virgin Islands. Primer pairs yielded an average of 5.7 alleles per locus, an average observed heterozygosity of 0.47, and average polymorphic information content of 0.43. Cross species amplification of these markers was performed on the six other extant species of marine turtles: olive ridley (Lepidochelys olivacea), Kemp’s ridley (Lepidochelys kempii), hawksbill (Eretmochelys imbricata), loggerhead (Caretta caretta), green (Chelonia mydas), and flatback (Natator depressus) turtles. Eleven of the markers worked in at least one of the species, and seven of these were polymorphic. These leatherback-specific microsatellite markers will facilitate population genetic and ecological studies to aid in the conservation of this divergent species of marine turtle, and provide additional markers for the other species of cheloniids.
References
Bowen BW, Karl SA (2007) Population genetics and phylogeography of sea turtles. Mol Ecol 16:4886–4907
Chan EH, Liew HC (1996) Decline of the leatherback populations in Terengganu, Malaysia, 1956–1995. Chelonian Conserv Biol 2:196–203
Dutton PH, Bowen BW, Owens DW, Barragan A, Davis SK (1999) Global phylogeography of the leatherback turtle (Dermochelys coriacea). J Zool 248:397–409
Dutton PH, Hitipeuw C, Zein M, Benson SR, Petro G, Pita J, Rei V, Ambio L, Bakarbessy J (2007) Status and genetic structure of nesting populations of leatherback turtles (Dermochelys cariacea) in the western Pacific. Chelonian Conserv Biol 6:47–53
Excoffier L, Laval G, Schneider S (2005) Arelquin ver. 3.0: an integrated software package for population genetics data analysis. Evol Bioinform Online 1:47–50
FitzSimmons NN, Moritz C, Moore SS (1995) Conservation and dynamics of microsatellite loci over 300 million years of marine turtle evolution. Mol Biol Evol 12:432–440
LeDuc C, Miller P, Lichter J, Parry P (1995) Batched analysis of genotypes. PCR Meth Appl 4:331–336
Lee PLM (2008) Molecular ecology of marine turtles: new approaches and future directions. J Exp Mar Biol Ecol 356:25–42
Monzón-Argüello C, Muñoz J, Marco A, Lopez-Jurado LF, Rico C (2007) Twelve new polymorphic markers from the loggerhead sea turtle (Caretta caretta) and cross-species amplification on other marine turtle species. Conserv Genet 9:1045–1049
Sarti-Martinez AL (2000) Dermochelys coriacea. In: IUCN 2006. 2006 IUCN Red List of Threatened Species. www.iucnredlist.org. Accessed 14 June 2010
Shamblin BM, Faircloth BC, Dodd MG, Bagley DA, Ehrhart LM, Dutton PH, Frey A, Nairn CJ (2009) Tetranucleotide markers from the loggerhead sea turtle (Caretta caretta) and their cross-amplification in other marine turtle species. Conserv Genet 10:577–580
Spotila JR, Dunham AE, Leslie AJ, Steyermark AC, Plotkin PT, Paladino FV (1996) Worldwide population decline of Dermocheleys coriacea: are leatherback turtles going extinct? Chelonian Conserv Biol 2:209–222
Van Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4:535–538
Westerman ME, Buonaccorsi VP, Stannard JA, Galver L, Taylor C, Lynn EA, Kimbrell CA, Vetter RD (2005) Cloning and characterization of novel microsatellite DNA markers for the grass rockfish, Sebastes rastrelliger, and cross-species amplification in 10 related Sebastes spp. Mol Ecol Notes 5:74–76
Acknowledgments
This research was funded by NOAA—National Marine Fisheries Service-Southwest Fisheries Science Center. We would like to thank Lara Asato, Luana Galver, Lauren Hansen, Nicole Hedrick, Amy Jue, Carrie LeDuc, Janet Lowther and Mark Westerman for their technical assistance in the laboratory. We are grateful to the U.S. Fish and Wildlife Service at Sandy Point National Wildlife Refuge, the West Indies Marine Animal Research and Conservation Service (WIMARCS) and the USVI Department of Planning and Natural Resources for facilitating collection of samples.
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Roden, S.E., Dutton, P.H. Isolation and characterization of 14 polymorphic microsatellite loci in the leatherback turtle (Dermochelys coriacea) and cross-species amplification. Conservation Genet Resour 3, 49–52 (2011). https://doi.org/10.1007/s12686-010-9284-4
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DOI: https://doi.org/10.1007/s12686-010-9284-4