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Isolation and characterization of microsatellite loci for the cavehopper Palmorchestia hypogaea (Amphipoda: Talitridae)

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Abstract

Eight polymorphic microsatellite loci for the subterraneous microphtalmous Palmorchestia hypogaea (Amphipoda: Talitridae) were isolated from a genomic library enriched for AG, AC and AAC repetitive elements. The number of alleles ranged from 2 to 8 per locus with the observed heterozygosity ranging from 0.00 to 0.94 in the two studied populations. These variable markers will be useful in evaluating gene flow and population structure within the subterranean populations and should provide valuable information about the importance of dispersal through the underground in the dynamic of cave biotas.

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References

  • Botstein D, White RL, Skalnik MH, Davies RW (1980) Construction of a genetic linkage map in man using restriction fragment length polymorphism. Am J Hum Genet 32:314–331

    CAS  PubMed  Google Scholar 

  • Chapuis M-P, Estoup A (2007) Microsatellite null alleles and estimation of population differentiation. Mol Biol Evol 24(3):621–631

    Article  CAS  PubMed  Google Scholar 

  • Commission EU (2002) Commission Decision of 28 December 2001 adopting the list of sites of Community importance for the Macaronesian biogeographical region, pursuant to Council Directive 92/43/EEC [notified under document number C(2001) 3998]. 45. L5/16. Official Journal of the European Communities

  • Culver DC, Pipan T, Schneider K (2009) Vicariance, dispersal and scale in the aquatic subterranean fauna of karst regions. Freshw Biol 54(4):918–929

    Article  Google Scholar 

  • Gardner MG, Sanchez JJ, Dudaniec RY, Rheinberger L, Smith AL, Saint KM (2008) Tiliqua rugosa microsatellites: isolation via enrichment and characterisation of loci for multiplex PCR in T. rugosa and the endangered T. adelaidensis. Conserv Genet 9(1):233–237

    Article  Google Scholar 

  • Hamilton MB, Pincus EL, Di Fiore A, Fleischer RC (1999) Universal linker and ligation procedures for construction of genomic DNA libraries enriched for microsatellites. BioTechniques 27:500–507

    CAS  PubMed  Google Scholar 

  • Hayden M, Nguyen T, Waterman A, Chalmers K (2008) Multiplex-ready PCR: a new method for multiplexed SSR and SNP genotyping. BMC Genomics 9(1):80

    Article  PubMed  Google Scholar 

  • Lefèbure T, Douady CJ, Malard F, Gibert J (2007) Testing dispersal and cryptic diversity in a widely distributed groundwater amphipod (Niphargus rhenorhodanensis). Mol Phylogenet Evol 42(3):676–686

    Article  PubMed  Google Scholar 

  • Pereira TC, Bittencourt VDA, Secolin R, de Souza-Rocha C, de Godoy-Maia I, Lopes-Cendes I (2007) Strand analysis, a free online program for the computational identification of the best RNA interference (RNAi) targets based on Gibbs free energy. Genet Mol Biol 30:1206–1208

    Article  CAS  Google Scholar 

  • Raymond M, Rousset F (1995a) An exact test for population differentiation. Evolution 49(6):1280–1283

    Article  Google Scholar 

  • Raymond M, Rousset F (1995b) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. J Hered 86:248–249

    Google Scholar 

  • Rozen S, Skaletsky HJ (2000) PRIMER 3 on the WWW for general users and for biologist programmers. In: Krawetz S, Misener S (eds) Bioinformatics methods and protocols: methods in molecular biology. Humana Press, Totowa, NJ, USA, pp 365–386

  • Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning, 2nd edn. Cold Spring Harbor Laboratory Press, New York

    Google Scholar 

  • Villacorta C, Jaume D, Oromi P, Juan C (2008) Under the volcano: phylogeography and evolution of the cave-dwelling Palmorchestia hypogaea (Amphipoda, Crustacea) at La Palma (Canary Islands). BMC Biol 6:7

    Article  PubMed  Google Scholar 

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Acknowledgements

We thank Steven J. Cooper and Matthew Hayden (University of Adelaide) for providing training and technology. The Cabildo of La Palma is acknowledged for granting permission and accommodation during field trips. This study was funded by Ministerio de Educación y Ciencia, Spain, under the project CGL2006-01365.

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Correspondence to Carlos Villacorta.

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Villacorta, C., Cánovas, F., Oromí, P. et al. Isolation and characterization of microsatellite loci for the cavehopper Palmorchestia hypogaea (Amphipoda: Talitridae). Conservation Genet Resour 1, 401–404 (2009). https://doi.org/10.1007/s12686-009-9093-9

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  • DOI: https://doi.org/10.1007/s12686-009-9093-9

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