Abstract
Protein content (PC) and protein index (PI) play important roles in determining nutritional quality in rice (Oryza sativa L.). We used 71 lines derived from “Asominori/IR24” to analyze the developmental behavior of PC and PI through unconditional and conditional QTL mapping methods. In all, 10 unconditional QTLs and 6 conditional QTLs for PC, and 11 unconditional QTLs and 9 conditional QTLs for PI, were identified at four stages of grain filling. More were identified in the first three stages than at the final stage. Temporal patterns of gene expression for PC and PI differed over time, with several QTLs being expressed across two or three stages but many being expressed at only one stage. Some of these QTLs were closely linked with maturity QTLs reported previously. Many QTLs for PC and PI were co-localized, supporting the significant correlation found between PC and PI. Our results suggest that dynamic QTL mapping might be a valid means for revealing more genetic information about protein accumulations during seed development.
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Abbreviations
- DAF:
-
Days after flowering
- PC:
-
Protein content
- PI:
-
Protein index
- RFLP:
-
Restriction fragment length polymorphism
- RIL:
-
Recombinant inbred line
References
Chinese Bureau of Standardization (1982) Method for determination of crude protein in cereals and bean seeds (semi-micro-Kjeldahl method). Chinese Bureau of Standardization, Beijing, GB 2905–32, UDC 633.1/8
Hegsted DM (1969) Nutritional value of cereal proteins in relation to human needs. In: Milner M (ed) Protein-enriched Cereal Foods for World Needs. American Association of Cereal Chemists, St. Paul, pp 38–48
Hu ZL, Li P, Zhou MQ, Zhang ZH, Wang LX, Zhu LH, Zhu YG (2004) Mapping of quantitative trait loci (QTL) for rice protein and fat content using doubled haploid lines. Euphytica 135:47–54
Li JM, Xiao JH, Grandilo S, Jiang LY, Wan YZ, Deng QY, Yuan LP, McCouch SR (2004) QTL detection for rice grain quality traits using an interspecific backcross population derived from cultivated Asian (O. sativa L.) and African (O. glaberrima S.) rice. Genome 47:697–704
McCouch SR, Cho YG, Yano M, Paul E, Blinstrub M, Morishima H, Kinoshita T (1997) Report on QTL nomenclature. Rice Genet Newslett 14:11–13
Shi CH, Zhu J, Yang XE, Yu YG, Wu JG (1999) Genetic analysis for protein content in indica rice. Euphytica 107:135–140
Sun DS, Li WB, Zhang ZC, Chen QS, Ning HL, Qiu LJ, Sun GL (2006) Quantitative trait loci analysis for the developmental behavior of soybean (Glycine max L. Merr.). Theor Appl Genet 112:665–673
Tan YF, Sun M, Xing YZ, Hua JP, Sun XL, Zhang QF, Corke H (2001) Mapping quantitative trait loci for milling quality, protein content and color characteristics of rice using a recombinant inbred line population derived from an elite rice hybrid. Theor Appl Genet 103:1037–1045
Tsunematsu H, Yoshimura A, Harushima Y, Nagamura Y, Kurata N, Yano M, Saski T, Iwata N (1996) RFLP framework map using recombinant inbred lines in rice. Breed Sci 46:279–284
Variath MT, Wu JG, Li YX, Chen GL, Shi CH (2009) Genetic analysis for oil and protein contents of rapeseed (Brassica napus L.) at different developmental times. Euphytica 166:145–153
Wang HL, Zhang WW, Liu LL, Shen YY, Wang JK, Jiang L, Zhai HQ, Wan JM (2008) Dynamic QTL analysis on rice fat content and fat index using recombinant inbred lines. Cereal Chem 85:769–775
Wang SC, Basten J, Zeng ZB (2007) Windows QTL Cartographer 2.5. Department of Statistics. North Carolina State University, Raleigh
Wu WR, Li WM, Tang DZ, Lu HR, Worland AJ (1999) Time-related mapping of quantitative trait loci underlying tiller number in rice. Genetics 151:297–303
Yan JQ, Zhu J, He CX, Benmoussa M, Wu P (1998) Molecular dissection of developmental behavior of plant height in rice (Oryza sativa L.). Genetics 150:1257–1265
Ye ZH, Lu ZZ, Zhu J (2003) Genetic analysis for developmental behavior of some seed quality traits in upland cotton (Gossypium hirsutum L.). Euphytica 129:183–191
Yoshida S, Ikegami M, Kuze J, Sawada K, Hashimoto Z, Ishii T, Nakamura C, Kamijima O (2002) QTL analysis for plant and grain characters of sake-brewing rice using a doubled haploid population. Breed Sci 52:309–317
Yu Y, Li G, Fan Y, Zhang K, Min J, Zhu Z, Zhuang J (2009) Genetic relationship between grain yield and the contents of protein and fat in a recombinant inbred population of rice. J Cereal Sci 50:121–125
Zeng ZB (1993) Theoretical basis of separation of multiple linked gene effects on mapping quantitative trait loci. Proc Natl Acad Sci USA 90:10972–10976
Zhang WW, Bi JC, Chen LM, Zheng LN, Ji SL, Xia YM, Xie K, Zhao ZG, Wang YH, Liu LL, Jiang L, Wan JM (2008) QTL mapping for crude protein and protein fraction contents in rice (Oryza sativa L.). J Cereal Sci 48:539–547
Zhu J (1995) Analysis of conditional genetic effects and variance components in developmental genetics. Genetics 141:1633–1639
Acknowledgements
This research was supported by grants from the National Key Transformation Program (2008ZX01001-006), the National Natural Science Foundation of China (30971759), the Jiangsu Cultivar Development Program (BE2008354 and BE2009301-3), the National Science and Technology Supporting Program, and the earmarked fund for a Modern Agro-industry Technology Research System.
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Zheng, L., Zhang, W., Chen, X. et al. Dynamic QTL Analysis of Rice Protein Content and Protein Index Using Recombinant Inbred Lines. J. Plant Biol. 54, 321–328 (2011). https://doi.org/10.1007/s12374-011-9170-y
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DOI: https://doi.org/10.1007/s12374-011-9170-y