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Varietal Break Down to Red Rot in the Sugarcane Variety Co 0238 Mimics Vertifolia Effect: Characterizing New Colletotrichum falcatum Pathotype CF13

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Abstract

Red rot, a fungal disease caused by Colletotrichum falcatum Went is the major constraint for sugarcane production in India and many other Asian countries. Recurrent epidemics of the disease cause varietal breakdown in popular varieties, thereby elite varieties with red rot resistance succumb to new variants of the pathogen and cause huge economic losses. We investigated on the recent devastating red rot epidemic that struck the popular cv Co 0238, cultivated in ~ 2.2 M ha in Uttar Pradesh (UP) (82.21% cane area) and 0.16 M ha in Bihar (64.12% cane area) states by pathotyping of 67 C. falcatum isolates including 45 from the cv Co 0238 and 22 from other varieties along with seven designated pathotypes on a set of 20 host differentials. The differential interaction studies conducted at five locations in the states of UP, Haryana and Punjab revealed that all the Cf0238 isolates maintained a discrete pathogenicity pattern of infecting the host cv Co 0238. Further, all the designated pathotypes and other host isolates did not show their virulence on the cv Co 0238. Similarly, all the Cf0238 isolates (45) maintained an avirulence behaviour on CoJ 64, the susceptible differential at all the locations. These pathogenicity data of new C. falcatum isolates from Co 0238 and other varieties on the host differentials clearly showed emergence of a specific pathotype capable of infecting the predominant variety under cultivation Co 0238 in the subtropical region. Reason for the sudden outbreak and extensive crop losses in thousands of hectares is attributed to monoculture of the variety in more than 80% area in the region due to ‘Vertifolia effect’. The monoculture also created a selection pressure from the pathogen to adapt to the host and caused breakdown of resistance favoured by waterlogging and flooding in the region. We have designated the new virulent isolate from Co 0238 as a new C. falcatum pathotype CF13 based on detailed characterization for pathogenicity and is recommended for screening sugarcane varieties for red rot resistance. This study also indicated repeat of boom and bust cycle in sugarcane–red rot interaction due to monoculture, leading to emergence of a virulent pathotype and large-scale destruction of the crop under cultivation.

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References

  • Abbott, E.V. 1938. Red rot of sugarcane. Technical Bulletin No 641, USDA p96.

  • Beniwal, M.S., and K.S. Virk. Satyavir. 1989. Pathogenic variability in Colletotrichum falcatum incitant of red rot of sugarcane. Indian Phytopathology 42: 95–98.

    Google Scholar 

  • Chona, B.L. 1980. Red rot of sugarcane and sugar industry—A review. Indian Phytopathology 33: 191–207.

    Google Scholar 

  • Chona, B.L., and D.N. Srivastava. 1960. Variation in Colletotrichum falcatum Went the causal organism of red rot of sugarcane. Indian Phytopathology 13: 158–160.

    Google Scholar 

  • Chona, B.L., and W.G. Padwick. 1942. More light on the red rot epidemic. Indian Farming 3: 70–73.

    Google Scholar 

  • Duttamajumder, S.K., N. Singh, and V.P. Agnihotri. 1990. Behavior of Colletotrichum falcatum under waterlogged condition. Indian Phytopathology 43: 227–229.

    Google Scholar 

  • Hemaprabha, G., K. Mohanraj, S. Alarmelu, and B. Ram. 2020. Assessment of breeding methods and parental value of Co canes developed during 1918–2017. Journal of Sugarcane Research 10: 24–31.

    Article  Google Scholar 

  • Indian Sugar Mills Association (ISMA). 2021. https://www.indiansugar.com/Statics.aspx

  • Kumar, S., G. Stecher, M. Li, C. Knyaz, and K. Tamura. 2018. MEGA X: Molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution 35: 1547–1549.

    Article  CAS  Google Scholar 

  • Malathi, P., and R. Viswanathan. 2012a. Variation in Colletotrichum falcatum-red rot pathogen of sugarcane in relation to host resistance. Sugar Tech 14: 181–187.

    Article  CAS  Google Scholar 

  • Malathi, P., and R. Viswanathan. 2012b. Identification of pathogenicity determinants in Colletotrichum falcatum using wild and mutant cultures. Sugar Tech 14: 383–390.

    Article  CAS  Google Scholar 

  • Malathi, P., R. Viswanathan, and R. Jothi. 2006. Specific adaptation of Colletotrichum falcatum pathotypes to sugarcane cultivars. Sugar Tech 8: 54–58.

    Article  Google Scholar 

  • Mohanraj, D., P. Padmanaban, and R. Viswanathan. 2012. Screening for red rot resistance in sugarcane. In Functional plant science and biotechnology 6 (special issue 2), ed. R. Viswanathan and A.R. Sundar, 51–62. Ikenobe, Japan: Global Science Books.

    Google Scholar 

  • Mohanraj, D., S. Kumaresan, and T.V. Sreenivasan. 2002. Molecular characterization of isolates of the sugarcane red rot pathogen. Indian Phytopathology 55: 147–151.

    CAS  Google Scholar 

  • Natarajan, U.S., T.C.R. Rao, N. Balasundaram, K. Palanichamy, and B.K. Tripathi. 1998. Red rot resistance in sugarcane—A critique. Sugar Cane 1: 11–14.

    Google Scholar 

  • Padmanaban, P., D. Mohanraj, R. Viswanathan, M.M. Rao, N. Prakasam, R. Jothi, and K.C. Alexander. 1996. Differential interaction of sugarcane clones to pathotypes of Colletotrichum falcatum Went. Sugar Cane 4: 16–20.

    Google Scholar 

  • Pappelis, A.J., and R.A. Katasanos. 1965. An approach to the study of the physiology of senescence and parasitism in sugarcane. Phytopathology 55: 620–622.

    Google Scholar 

  • Rafay, S.A., and V.B. Singh. 1957. A new strain of Glomerella tucumanensis. Current Science 10: 25–26.

    Google Scholar 

  • Ram, B., and G. Hemaprabha. 2020. The sugarcane variety Co 0238—A reward to farmers and elixir to India’s sugar sector. Current Science 118: 1643–1646.

    Google Scholar 

  • Satyavir. 2003. Red rot of sugarcane—Current Scenario. Indian Phytopathology 56: 245–254.

    Google Scholar 

  • Srinivasan, K.V. 1962. Some observations on variation in the red rot pathogen, Glomerella tucumanensis (Speg.) Arx & Muller. Proceedings of International Society of Sugar Cane Technologists 11: 795–802.

    Google Scholar 

  • Srinivasan, K.V. 1965. Towards the ideals of red rot resistance—Ends and means. Proceedings of International Society of Sugar Cane Technologists 12: 1108–1117.

    Google Scholar 

  • Srinivasan, K.V., and N.R. Bhat. 1961. Red rot of sugarcane—Criteria for grading resistance. Journal of Indian Botanical Society 40: 566–577.

    Google Scholar 

  • Vanderplank, J.E. 1963. Plant diseases: Epidemics and control. New York and London: Academic Press.

    Google Scholar 

  • Viswanathan, R. 2010. Plant disease: Red rot of Sugarcane. New Delhi: Anmol Publications Pvt Ltd.

    Google Scholar 

  • Viswanathan, R. 2016. Varietal degeneration in sugarcane and its management in India. Sugar Tech 18: 1–7.

    Article  Google Scholar 

  • Viswanathan, R. 2017. Pathogen virulence in sugarcane red rot pathogen versus varieties in cultivation: Classical case of loss in virulence in the pathotype CF06 (Cf671). Sugar Tech 19: 293–299.

    Article  CAS  Google Scholar 

  • Viswanathan, R. 2018. Changing scenario of sugarcane diseases in India since introduction of hybrid cane varieties: Path travelled for a century. Journal of Sugarcane Research 8 (1): 1–35.

    Google Scholar 

  • Viswanathan, R. 2021a. Red rot of sugarcane (Colletotrichum falcatum Went). CAB Reviews. https://doi.org/10.1079/PAVSNNR202116023.

    Article  Google Scholar 

  • Viswanathan, R. 2021b. Sustainable sugarcane cultivation in India through threats of red rot by varietal management. Sugar Tech 23: 239–253. https://doi.org/10.1007/s12355-020-00882-3.

    Article  CAS  Google Scholar 

  • Viswanathan, R., V. Jayakumar et al. 2011. Technical Report, Plant Pathology, All India Coordinated Research Project on Sugarcane, 2010–11, Coimbatore, India: ICAR-Sugarcane Breeding Institute.

  • Viswanathan, R., V. Jayakumar and R. Selvakumar. 2017. Technical Report, Plant Pathology, All India Coordinated Research Project on Sugarcane, 2016–17, Coimbatore, India: ICAR-Sugarcane Breeding Institute.

  • Viswanathan, R., V. Jayakumar and R. Selvakumar. 2018. Technical Report, Plant Pathology, All India Coordinated Research Project on Sugarcane, 2017–18. Coimbatore, India: ICAR-Sugarcane Breeding Institute.

  • Viswanathan, R., and R. Selvakumar. 2020. Varietal breakdown to red rot in sugarcane revealed by comparing two Colletotrichum falcatum inoculation methods. Sugar Tech 22: 1063–1075.

    Article  CAS  Google Scholar 

  • Viswanathan, R., P. Malathi, and P. Padmanaban. 2003. Variation in sugarcane red rot pathogen Colletotrichum falcatum Went. In Frontiers of fungal diversity in India, ed. G.P. Rao, C. Manoharachari, D.J. Bhat, R.C. Rajak, and T.N. Lakhanpal, 639–667. Lucknow: International Book Distributing Co.

    Google Scholar 

  • Viswanathan, R., P. Malathi, A.R. Sundar, K. Kaverinathan, M.L. Chhabra, B. Parameswari, and R. Jothi. 2017b. Diversity of Colletotrichum falcatum population in India: Comparative virulence at two different agro-climatic regions. International Sugar Journal 119: 966–977.

    Google Scholar 

  • Viswanathan, R., P. Padmanaban, and R. Selvakumar. 2020a. Emergence of new pathogenic variants in Colletotrichum falcatum, stalk infecting ascomycete in sugarcane: Role of host varieties. Sugar Tech 22: 473–484.

    Article  CAS  Google Scholar 

  • Viswanathan, R., R. Selvakumar, P. Malathi, and N. Prakasam. 2021. Controlled condition testing (CCT): An ideal high-throughput method for screening of pre-release clones and progenies for red rot resistance in sugarcane. Sugar Tech 23: 1045–1055. https://doi.org/10.1007/s12355-021-00970-y.

    Article  Google Scholar 

  • Viswanathan, R., R. Selvakumar, K. Manivannan, R. Nithyanandam, and K. Kaverinathan. 2020b. Pathogenic behaviour of soil borne inoculum of Colletotrichum falcatum in causing red rot in sugarcane varieties with varying disease resistance. Sugar Tech 22: 485–497.

    Article  CAS  Google Scholar 

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Funding

The centres Shahjahanpur, Seorahi, Kapurthala and Pusa acknowledge the financial support received from the Project Coordinator, All India Coordinated Research Project on Sugarcane, ICAR-IISR, Lucknow, UP, India. All the authors acknowledge support from AICRP on Sugarcane of ICAR, New Delhi.

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Author notes

  1. R. Viswanathan and Sujeet Pratap Singh have contributed equally to this work.

Authors and Affiliations

  1. Division of Crop Protection, ICAR-Sugarcane Breeding Institute, Coimbatore, Tamil Nadu, 641007, India

    R. Viswanathan & R. Selvakumar

  2. UP Council of Sugarcane Research, Shahjahanpur, Uttar Pradesh, India

    Sujeet Pratap Singh

  3. ICAR-Indian Institute of Sugarcane Research, Lucknow, Uttar Pradesh, India

    Dinesh Singh

  4. Genda Singh Sugarcane Breeding and Research Institute, Seorahi, Uttar Pradesh, India

    Y. P. Bharti

  5. ICAR-Sugarcane Breeding Institute Regional Centre, Karnal, Haryana, India

    M. L. Chhabra & B. Parameswari

  6. ICAR-National Bureau of Plant Genetic Resources, Regional Station, Hyderabad, 500 030, India

    B. Parameswari

  7. Regional Research Centre, PAU, Kapurthala, Punjab, India

    Anuradha Sharma

  8. Sugarcane Research Institute, RPCAU Campus, Pusa, Bihar, India

    Md. Minnatullah

Authors
  1. R. Viswanathan
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  2. Sujeet Pratap Singh
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  3. R. Selvakumar
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  4. Dinesh Singh
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  6. M. L. Chhabra
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Correspondence to R. Viswanathan.

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Viswanathan, R., Singh, S.P., Selvakumar, R. et al. Varietal Break Down to Red Rot in the Sugarcane Variety Co 0238 Mimics Vertifolia Effect: Characterizing New Colletotrichum falcatum Pathotype CF13. Sugar Tech 24, 1479–1496 (2022). https://doi.org/10.1007/s12355-021-01070-7

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