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The Microbial Community Structure of Rhizosphere Soil was Influenced by Different Sugarcane Varieties with Different Ratooning Abilities

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Abstract

Strong ratoon ability is the key factor in improving sugarcane productivity and reducing production costs. Soil microorganisms are sensitive to environmental changes and play an important role in regulating soil ecological functions. However, the impacts of sugarcane varieties with different ratooning abilities on soil microorganisms are poorly understood. Therefore, two common cultivated varieties with different ratooning abilities (Yuetang 94-128 with strong ratooning ability and Yuetang 03-373 with low ratooning ability) were selected to study the effects of sugarcane varieties on sugarcane yield and microbial community structure from 2017 to 2019 in South China. The Illumina MiSeq platform was applied in the present study to detect the diversity and community structure of rhizosphere soil bacteria and fungi in the different sugarcane varieties in 2019. The results showed that sugarcane cane yield and sugar yield were higher in Yuetang 94-128 during the three years, whereas the sugar content was lower in Yuetang 94-128 than in Yuetang 03-373 during this time. Different years influenced cane yield and sugar yield, while the sucrose content remained stable during the different years. The pH, organic matter (SOM) and total nitrogen (TN) contents were significantly lower in Yuetang 03-373 than in Yuetang 94-128, whereas the other indices had no significant difference between the different varieties. The α-diversity of sugarcane rhizosphere soil bacteria and fungi was not significantly different between the different varieties. Compared with Yuetang 03-373, the increase in bacterial taxa associated with the soil carbon and nitrogen cycles may be one of the reasons for the strong ratooning of Yuetang 94-128. The difference in rare fungal taxa between the two sugarcane varieties may lead to different ecological functions in the soil. Redundancy analysis (RDA) and Mantel test showed that the soil physical and chemical properties did not significantly influence the microbial community structure, which could indicate that sugarcane variety was the primary variable responsible for microbial community structure. This study provided important information on the rhizosphere soil microbial community structure of different sugarcane varieties with different ratooning abilities and provided a theoretical basis for improving the ratooning ability of sugarcane varieties from the perspective of improving soil microbial community.

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References

  • Aaron, K.M., Y. Chuntao, and H.H. Scot. 2017. Community structure, species variation, and potential functions of rhizosphere-associated bacteria of different winter wheat (Triticum aestivum) cultivars. Frontiers in Plant Science 8: 132.

    Google Scholar 

  • Adhikari, M., D.R. Yadav, S.W. Kim, Y.H. Um, H.S. Kim, S.C. Lee, J.Y. Song, H.G. Kim, and Y.S. Lee. 2017. Biological control of bacterial fruit blotch of watermelon pathogen (Acidovorax citrulli) with rhizosphere associated bacteria. Plant Pathology Journal 33: 170–183.

    CAS  Google Scholar 

  • Alami, M.M., J. Xue, Y. Ma, D. Zhu, and X. Wang. 2020. Diversity structure, diversity, and composition of bacterial communities in rhizospheric soil of Coptis chinensis franch under continuously cropped fields. Diversity 12 (2): 57.

    CAS  Google Scholar 

  • Bao, S.D. 2013. Soil and agriculture chemistry analysis, 3rd ed. Beijing: China Agriculture Press.

    Google Scholar 

  • Barelli, L., S.W. Behie, and M.J. Bidochka. 2019. Availability of carbon and nitrogen in soil affects Metarhizium robertsii root colonization and transfer of insect derived nitrogen. FEMS Microbiology Ecology 95 (10): 144.

    CAS  PubMed  Google Scholar 

  • Bashir, S., M. Hassan, N. Fiaz, Z. Khan, and Z. Ali. 2013. Ratooning potential of difffferent promising sugarcane genotypes at varying harvesting dates. ARPN Journal of Agricultural and Biological Science 8: 437–440.

    Google Scholar 

  • Botelho, A.B.R.Z., A. Alves-Pereira, R.C. Prado, M.I. Zucchi, and I. Delalibera. 2019. Metarhizium species in soil from brazilian biomes: A study of diversity, distribution, and association with natural and agricultural environments. Fungal Ecology 41: 289–300.

    Google Scholar 

  • Carson, D.L., and F.C. Botha. 2002. Genes expressed in sugarcane maturing internodal tissue. Plant Cell Reports 20: 1075–1081.

    CAS  Google Scholar 

  • Chandra., A, Gaur., V Tripathi., P, 2021. Microbiome analysis of rhizospheres of plant and winter initiated ratoon crops of sugarcane grown in sub tropical india utility to improve ratoon crop productivity. 3 Biotech. 11:(1)

  • Chen, S., G. Qi, G. Ma, and X. Zhao. 2019. Biochar amendment controlled bacterial wilt through changing soil chemical properties and microbial community. Microbiological Research 231: 126373.

    PubMed  Google Scholar 

  • Chumphu, S., N. Jongrungklang, and P. Songsri. 2019. Association of physiological responses and root distribution patterns of ratooning ability and yield of the second ratoon cane in sugarcane elite clones. Agronomy 9 (4): 200–200.

    Google Scholar 

  • Araujo de, A.S.F., W.M. Bezerra, V.M. Santos dos, L.A.P.L. Nunes, M.D.C.C.P. Lyra de, D.V.B.F. Marcia, and V.M.M. Melo. 2017. Fungal diversity in soils across a gradient of preserved Brazilian Cerrado. Journal of Microbiology 55 (4): 273–279.

    Google Scholar 

  • Debaeke, P., and J. Moinard. 2010. Effect of crop management on epidemics of phomopsis stem canker (Diaporthe helianthi) for susceptible and tolerant sunflower cultivars. Field Crops Research 115 (1): 50–60.

    Google Scholar 

  • Dodd, J.C., C.L. Boddington, A. Rodriguez, C. Gonzalez-Chavez, and I. Mansur. 2000. Mycelium of arbuscular mycorrhizal fungi (AMF) from different genera: form, function and detection. Plant and Soil 226 (2): 131–151.

    CAS  Google Scholar 

  • Duma, S.W., H. Shimelis, S. Ramburan, and A.I.T. Shayanowako. 2019. Genotype-by-region interactions of released sugarcane varieties for cane yield in the South African sugar industry. Journal of Crop Improvement 33 (4): 478–504. https://doi.org/10.1080/15427528.2019.1621974.

    Article  Google Scholar 

  • Ellegaard-Jensen, L., J. Aamand, B.B. Kragelund, A.H. Johnsen, and R. Søren. 2013. Strains of the soil fungus mortierella show different degradation potentials for the phenylurea herbicide diuron. Biodegradation 24 (6): 765–774.

    CAS  PubMed  Google Scholar 

  • Elshafie, A.E., R. Al-Mueini, S.N. Al-Bahry, and A.Y. Alkindi. 2005. Nematophagous and non-nematophagous fungi belonging to the genera Arthrobotrys and Daetylella from soils in Oman. Kuwait Journal of Science and Engineering 32 (2): 57–71.

    Google Scholar 

  • FAO, 2011. Food and Agriculture Organization. Faostat. http://faostat.fao.org/

  • Fierer, N., J. Ladau, J.C. Clemente, J.W. Leff, S.M. Owens, K.S. Pollard, R. Knight, J.A. Gilbert, and R.L. McCulley. 2013. Reconstructing the microbial diversity and function of preagricultural tallgrass prairie soils in the United States. Science 342: 621–624. https://doi.org/10.1126/science.1243768.

    Article  CAS  PubMed  Google Scholar 

  • Gao, X., Z. Wu, R. Liu, J. Wu, Q. Zeng, and Y. Qi. 2019. Rhizosphere bacterial community characteristics over different years of sugarcane ratooning in consecutive monoculture. Biomed Research International 2019 (1): 10.

    Google Scholar 

  • Gao, X.X., S.C. Liu, Y.B. Zhang, Z.C. Fang, J.M. Dao, and X. Fan. 2016. Progress in recession mechanism and control measure research on ratoon crops of sugarcane. Subtropical Agricultural Research 12 (4): 284–288 ((In Chinese)).

    Google Scholar 

  • Gilbert, R.A., J.M. Shine, J.D. Miller, R.W. Rice, and C.R. Rainbolt. 2006. The effect of genotype, environment and time of harvest on sugarcane yields in Florida, USA. Field Crops Research 95 (2–3): 156–170.

    Google Scholar 

  • Hansel, C.M., S. Fendorf, P.M. Jardine, and C.A. Francis. 2008. Changes in bacterial and archaeal community structure and functional diversity along a geochemically variable soil profile. Applied and Environmental Microbiology 74 (5): 1620–1633.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Hartmann, A., M. Schmid, D. Tuinen van, and G. Berg. 2009. Plant-driven selection of microbes. Plant and Soil 321: 235–257. https://doi.org/10.1007/s11104-008-9814-y.

    Article  CAS  Google Scholar 

  • Hartmann, M., B. Frey, J. Mayer, P. Mader, and F. Widmer. 2015. Distinct soil microbial diversity under long-term organic and conventional farming. ISME Journal 9: 1177–1194.

    Google Scholar 

  • Hartmann, M., and F. Widmer. 2006. Community structure analyses are more sensitive to differences in soil bacterial communities than anonymous diversity indices. Applied and Environmental Microbiology 72 (12): 7804–7812.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Hernández Pérez, A., E. Cerna Chávez, J.C. Delgado Ortiz, M. Beltrán Beache, O. Hernández Bautista, L. Tapia Vargas, and Y. Ochoa Fuentes. 2018. First report of Mortierella elongata as a pathogen of avocado crop in Michoacán, Mexico. Scientia Fungorum 48: 95–98. https://doi.org/10.33885/sf.2018.48.1232.

    Article  Google Scholar 

  • Inderjit, Weston, L.A., 2003. Root exudates an Overview Root Ecology. 168: 235–255

  • Jiang, H., H. Dong, G. Zhang, B. Yu, L.R. Chapman, and M.W. Fields. 2006. Microbial diversity in water and sediment of Lake Chaka, an athalassohaline lake in northwestern China. Applied and Environmental Microbiology 72 (6): 3832–3845.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Johnson, S.S., A.P. Tyagi, S.S. Johnson, and A.P. Tyagi. 2011. Effect of ratoon stunting disease (RSD) on sugarcane yield in Fiji. The South Pacific Journal of Natural and Applied Sciences 28 (1): 69–73.

    Google Scholar 

  • Josep, R., J. Roux Johannes de, F. Emmanuel, F. Beat, and G.H. Andres. 2020. Experimental assembly reveals ecological drift as a major driver of root nodule bacterial diversity in a woody legume crop. FEMS Microbiology Ecology 96 (6): 6.

    Google Scholar 

  • Kamyabi, A., H. Nouri, and H. Moghimi. 2018. Characterization of pyrene degradation and metabolite identification by basidioascus persicus and mineralization enhancement with bacterial-yeast co-culture. Ecotoxicology and Environmental Safety 163: 471–477. https://doi.org/10.1016/j.ecoenv.2018.07.098.

    Article  CAS  PubMed  Google Scholar 

  • Kataoka, R., K. Takagi, and F. Sakakibara. 2010. A new endosulfan-degrading fungus, mortierella species, isolated from a soil contaminated with organochlorine pesticides. Journal of Pesticide Science 35 (3): 326–332.

    CAS  Google Scholar 

  • Khan, H., E.J. Chung, D.Y. Kang, C.O. Jeon, and Y.R. Chung. 2013. Mucilaginibacter jinjuensis sp. nov. with xylan-degrading activity. International Journal of Systematic and Evolutionary Microbiology 63: 1267–1272.

    CAS  PubMed  Google Scholar 

  • Kshitij, R., F.S. Paula, R.C. Mueller, E.D.C. Jesus, C. Karina, B.J.M. Bohannan, K. Nüsslein, and L.M. Rodrigues Jorge. 2015. Forest-to-pasture conversion increases the diversity of the phylum verrucomicrobia in amazon rainforest soils. Frontiers in Microbiology 6: 779. https://doi.org/10.3389/fmicb.2015.00779.

    Article  Google Scholar 

  • Kumar, D., N. Maurya, P. Kumar, H. Singh, and S.K. Addy. 2015. Assessment of germination and carnivorous activities of a nematode-trapping fungus Arthrobotrys dactyloides in fungistatic and fungicidal soil environment. Biological Control 82: 76–85.

    CAS  Google Scholar 

  • Kumar, S., Suyal, D.C., Bhoriyal, M., Goel, R., 2018. Plant growth promoting potential of psychrotolerant Dyadobacter sp for pulses and finger millet and impact of inoculation on soil chemical properties and Diazotrophic abundance. Journal of Plant Nutrition. 41 (8): 1035–1046

    Google Scholar 

  • Li, B., Z. Li, X. Sun, Q. Wang, E. Xiao, and W. Sun. 2018a. Dna-sip reveals the diversity of chemolithoautotrophic bacteria inhabiting three different soil types in typical karst rocky desertification ecosystems in Southwest China. Microbial Ecology 76: 976–990.

    CAS  PubMed  Google Scholar 

  • Li, C., K. Yan, L. Tang, Z. Jia, and Y. Li. 2014. Change in deep soil microbial communities due to long-term fertilization. Soil Biology and Biochemistry 75: 264–272.

    CAS  Google Scholar 

  • Li, P., S. Ye, H. Liu, A. Pan, F. Ming, and X.M. Tang. 2018b. Cultivation of drought-tolerant and insect-resistant rice affects soil bacterial, but not fungal, abundances and community structures. Frontiers in Microbiology 09: 1390.

    Google Scholar 

  • Mcguire, K.L., S.D. Allison, F. Noah, K.K. Treseder, and T. Jean. 2013. Ectomycorrhizal-dominated boreal and tropical forests have distinct fungal communities, but analogous spatial patterns across soil horizons. PLoS One 8 (7): 68278.

    Google Scholar 

  • Mendes, R., M. Kruijt, I. Bruijn de, E. Dekkers, M. Voort vander, J.H. Schneider, and J.M. Raaijmakers. 2011. Deciphering the rhizosphere microbiome for disease-suppressive bacteria. Science 332: 1097–1100.

    CAS  PubMed  Google Scholar 

  • Mohr, K.I., Garcia, R.O., Gerth, K., Irschik, H., Muller, R., 2012. Sandaracinus amylolyticus gen. nov sp. nov a starch degrading soil myxobacterium and description of Sandaracinaceae fam nov. International Journal of Systematic and Evolutionary Microbiology. 62 (5): 1191–1198

    Google Scholar 

  • Nixon, S.L., Daly, R.A., Borton, M.A., Solden, L.M., Wrighton, K.C., 2019. Genome resolved metagenomics extends the environmental distribution of the Verrucomicrobia phylum to the deep terrestrial subsurface. mSphere 4 (6)

  • Pedersen, P., and C.R. Grau. 2010. Effect of agronomic practices and soybean growth stage on the colonization of basal stems and taproots by var. Crop Science 50 (2): 718–722.

    Google Scholar 

  • Romaniuk, R., L. Giufre, A. Costantini, N. Bartoloni, and P.A. Nannipieri. 2011. Comparison of indexing methods to evaluate quality of soils: the role of soil microbiological properties. Soil Research 49: 733–741.

    Google Scholar 

  • Satyaprakash, B., A.C. Reddy, P. Naresh, K.  Meenu, and S. Gs, 2020. Breeding for bacterial wilt resistance in eggplant (Solanum melongena L.): progress and prospects. Crop Protection. 137: 105270

  • Schneider, S., F. Widmer, K. Jacot, R. Kölliker, and J. Enkerli. 2012. Spatial distribution of metarhizium clade 1 in agricultural landscapes with arable land and different semi-natural habitats. Applied Soil Ecology 52: 20–28.

    Google Scholar 

  • Sharma, G., I. Khatri, and S. Subramanian. 2016. Complete genome of the stach-degrading Myxobacteria sandaracinus amylolyticus DSM 53668T. Genome Biology Evolution 8: 2520–2529. https://doi.org/10.1093/gbe/evw151.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Shi, Y., Qiu, L., Guo, L., Man, J., Cui, X., 2020. K fertilizers reduce the accumulation of Cd in panax notoginseng (burk.) f.h. by improving the quality of the microbial community. Frontiers in Plant Science 11:888

    PubMed  PubMed Central  Google Scholar 

  • Tautges, N.E., T.S. Sullivan, C.L. Reardon, and I.C. Burke. 2016. Soil microbial diversity and activity linked to crop yield and quality in a dryland organic wheat production system. Applied Soil Ecology 108: 258–268.

    Google Scholar 

  • Tkacz, A., and P. Poole. 2015. Role of root microbiota in plant productivity. Journal of Experimental Botany 66: 2167–2175. https://doi.org/10.1093/jxb/erv157.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Valášková, V., J. Šnajdr, B. Bittner, T. Cajthaml, V. Merhautová, M. Hofrichter, and P. Baldrian. 2007. Production of lignocellulose-degrading enzymes and degradation of leaf litter by saprotrophic basidiomycetes isolated from a Quercus petraea forest. Soil Biology and Biochemistry 39 (10): 2651–2660.

    Google Scholar 

  • Wagih, M.E., A. Ala, and Y. Musa. 2004. Evaluation of sugarcane varieties for maturity earliness and selection for efficient sugar accumulation. Sugar Tech 6 (4): 297–304.

    CAS  Google Scholar 

  • Wu, W.L., F.Y. Liu, F.Y. Pan, J.X. Yang, H.H. Ddeng, and J.T. Wu. 2011. Breeding of a new sugarcane variety Yuetang 03–373. Guangdong Agriculture Science 21: 41–43 ((In Chinese)).

    Google Scholar 

  • Xiong, C., Z.J. He, B.K. Singh, Y.G. Zhu, J.T. Wang, P.P. Li, Q.B. Zhang, L.L. Han, J.P. Shen, A.H. Ge, C.F. Wu, and L.M. Zhang. 2020. Rare taxa maintain the stability of crop mycobiomes and ecosystem functions. Environmental Microbiology. https://doi.org/10.1111/1462-2920.15262(online).

    Article  PubMed  Google Scholar 

  • Xiong, C., Y.G. Zhu, J.T. Wang, B. Singh, L.L. Han, J.P. Shen, and J.Z. He. 2021. Host selection shapes crop microbiome assembly and network complexity. New Phytologist 229 (2): 1091–1104.

    CAS  Google Scholar 

  • Yang, P., Y. Luo, Y. Gao, X. Gao, and B. Feng. 2020. Soil properties, bacterial and fungal community compositions and the key factors after 5-year continuous monocropping of three minor crops. PLoS One 15 (8): e0237164.

    CAS  PubMed  PubMed Central  Google Scholar 

  • Zelles, L. 1999. Fatty acid patterns of phospholipids and lipopolysaccharides in the characterisation of microbial communities in soil: a review. Biology and Fertility of Soils 29 (2): 111–129.

    CAS  Google Scholar 

  • Zhang, Y.Y., F.Y. Liu, and J.X. Yang. 2003. Preliminary report on breeding test of new sugarcane variety Yuetang 94–128. Sugarcane and Canesugra 000 (004): 1–3 ((In Chinese)).

    Google Scholar 

  • Zhang, H., Wu, X., Li, G., Qin, P., 2011. Interactions between arbuscular mycorrhizal fungi and phosphate-solubilizing fungus (mortierella sp.) and their effects on kostelelzkya virginica growth and enzyme activities of rhizosphere and bulk soils at different salinities. Biology and Fertility of Soils. 47 (5): 543–554.

    Google Scholar 

  • Zhang, X., G. Gao, Z. Wu, X. Wen, H. Zhong, Z. Zhong, F.Y. Bian, and X. Gai. 2019. Agroforestry alters the rhizosphere soil bacterial and fungal communities of moso bamboo plantations in subtropical China. Applied Soil Ecology 143: 192–200. https://doi.org/10.1016/j.apsoil.2019.07.019.

    Article  Google Scholar 

  • Zhao, J., T. Ni, J. Li, Q. Lu, Z.Y. Fang, Q.W. Huang, R.F. Zhang, R. Li, B. Shen, and Q.R. Shen. 2016. Effects of organic-inorganic compound fertilizer with reduced chemical fertilizer application on crop yields, soil biological activity and bacterial community structure in a rice-wheat cropping system. Applied Soil Ecology 99 (18): 1–12.

    Google Scholar 

  • Zheng, X., Y. Zhu, Z. Wang, H. Zhang, and B. Liu. 2020. Effects of a novel bio-organic fertilizer on the composition of rhizobacterial communities and bacterial wilt outbreak in a continuously mono-cropped tomato field. Applied Soil Ecology 156: 103717.

    Google Scholar 

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Funding

This work was supported by the Special Fund Project for the Construction of Domestic First-Class Research Institutions of Guangdong Academy of Sciences (2020GDASYL-20200103065) and the Science and Technology Development Program of Guangdong Province (Grant No. 2019B030301007).

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All authors contributed to the study conception and design. Study conception, design and field experimentation were performed by (S S Luo, Y L Lu and Y X An). Material preparation, data collection and analysis were performed by (S S Luo, L J Chen, Y L Lu, S X Dai, D L Sun and J H Li). The first draft of the manuscript was written by (S S Luo) and all authors commented on previous versions of the manuscript. All authors read and approved the final manuscript.

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Luo, S., Chen, L., Lu, Y. et al. The Microbial Community Structure of Rhizosphere Soil was Influenced by Different Sugarcane Varieties with Different Ratooning Abilities. Sugar Tech 23, 1306–1316 (2021). https://doi.org/10.1007/s12355-021-01019-w

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