Skip to main content

Advertisement

Log in

Molecular mechanism of a novel Ser362Asn mutation causing inherited FX deficiency in a Chinese family

  • Original Article
  • Published:
International Journal of Hematology Aims and scope Submit manuscript

Abstract

Factor X (FX) deficiency is an inherited autosomal recessive bleeding disorder. Here, we analyzed a proband with FX deficiency in a Chinese family. Genetic analysis revealed that the proband and his affected sister was homozygous for c.1085G>A mutation, corresponding to a Ser362Asn substitution. In vitro expression experiments showed that the FX Ser362Asn mutation led to a significant reduction in activity levels in the culture medium. This Ser to Asn substitution may change the shape of the active site. Moreover, simulations of molecular dynamics indicated that the binding energy of the FX Ser362Asn to the substrate is higher than that of wild type and the side-chain conformation of the catalytic residue His276 (His42) is changed. This impairs the conformational switch of the protein from zymogen to proteinase, thus causing the functional defect of FX protein. Our findings suggest that the Ser362Asn substitution is a pathogenic mutation that causes inherited FX deficiency.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6
Fig. 7
Fig. 8

Similar content being viewed by others

References

  1. Reddy SV, Zhou ZQ, Rao KJ, Scott JP, Watzke H, High KA, et al. Molecular characterization of human factor XSan Antonio. Blood. 1989;74:1486–90.

    Article  CAS  Google Scholar 

  2. Karimi M, Menegatti M, Afrasiabi A, Sarikhani S, Peyvandi F. Phenotype and genotype report on homozygous and heterozygous patients with congenital factor X deficiency. Haematol J. 2008;93:934–8.

    Article  Google Scholar 

  3. Epcacan S, Menegatti M, Akbayram S, Cairo A, Peyvandi F, Oner AF. Frequency of the p.Gly262Asp mutation in congenital factor X deficiency. Eur J Clin Investig. 2015;45:1087–91.

    Article  CAS  Google Scholar 

  4. Millar DS, Elliston L, Deex P, Krawczak M, Wacey AI, Reynaud J, et al. Molecular analysis of the genotype–phenotype relationship in factor X deficiency. Hum Genet. 2000;106:249–57.

    CAS  PubMed  Google Scholar 

  5. Leytus SP, Chung DW, Kisiel W, Kurachi K, Davie EW. Characterization of a cDNA coding for human factor X. PNAS. 1984;81:3699–702.

    Article  CAS  Google Scholar 

  6. Peyvandi F, Duga S, Akhavan S, Mannucci PM. Rare coagulation deficiencies. Haemophilia. 2002;8:308–21.

    Article  CAS  Google Scholar 

  7. Gilgenkrantz S, Briquel ME, Andre E, Alexandre P, Jalbert P, Le Marec B, et al. Structural genes of coagulation factors VII and X located on 13q34. Ann Genet. 1986;29:32–5.

    CAS  PubMed  Google Scholar 

  8. Leytus SP, Foster DC, Kurachi K, Davie EW. Gene for human factor X: a blood coagulation factor whose gene organization is essentially identical with that of factor IX and protein C. Biochemistry. 1986;25:5098–102.

    Article  CAS  Google Scholar 

  9. Venkateswarlu D, Perera L, Darden T, Pedersen LG. Structure and dynamics of zymogen human blood coagulation factor X. Biophys J. 2002;82:1190–206.

    Article  CAS  Google Scholar 

  10. Nagaya S, Akiyama M, Murakami M, Sekiya A, Asakura H, Morishita E. Congenital coagulation factor X deficiency: genetic analysis of five patients and functional characterization of mutant factor X proteins. Haemophilia. 2018;24:774–85.

    Article  CAS  Google Scholar 

  11. Uprichard J, Perry DJ. Factor X deficiency. Blood Rev. 2002;16:97–110.

    Article  Google Scholar 

  12. Wang WB, Fu QH, Zhou RF, Wu WM, Ding QL, Hu YQ, et al. Molecular characterization of two novel mutations causing factor X deficiency in a Chinese pedigree. Haemophilia. 2005;11:31–7.

    Article  CAS  Google Scholar 

  13. Adzhubei IA, Schmidt S, Peshkin L, Ramensky VE, Gerasimova A, Bork P, et al. A method and server for predicting damaging missense mutations. Nat Methods. 2010;7:248–9.

    Article  CAS  Google Scholar 

  14. Vaser R, Adusumalli S, Leng SN, Sikic M, Ng PC. SIFT missense predictions for genomes. Nat Protoc. 2016;11:1–9.

    Article  CAS  Google Scholar 

  15. Katz BA, Mackman R, Luong C, Radika K, Martelli A, Sprengeler PA, et al. Structural basis for selectivity of a small molecule, S1-binding, submicromolar inhibitor of urokinase-type plasminogen activator. Chem Biol. 2000;7:299–312.

    Article  CAS  Google Scholar 

  16. Martin ACR. Mapping PDB chains to UniProtKB entries. Bioinformatics. 2005;21:4297–301.

    Article  CAS  Google Scholar 

  17. DeLano WL. The PyMOL Molecular Graphics System (DeLano Scientific LLC, San Carlos, CA). PyMOL molecular graphics system on World Wide Web. https://www.pymol.org. 2002.

  18. Abdel-Azeim S, Oliva R, Chermak E, De Cristofaro R, Cavallo L. Molecular dynamics characterization of five pathogenic Factor X mutants associated with decreased catalytic activity. Biochemistry. 2014;53:6992–7001.

    Article  CAS  Google Scholar 

  19. Jorgensen WL, Duffy EM, Tirado-Rives J. Computational investigations of protein denaturation: apomyoglobin and chaotrope–arene interactions. Philos Trans R Soc B Biol Sci. 1993;345:87–96.

    CAS  Google Scholar 

  20. Menegatti M, Vangone A, Palla R, Milano G, Cavallo L, Oliva R, et al. A recurrent Gly43Asp substitution in coagulation Factor X rigidifies its catalytic pocket and impairs catalytic activity and intracellular trafficking. Thromb Res. 2014;133:481–87.

    Article  CAS  Google Scholar 

  21. Girolami A, Ferrari S, Cosi E, Santarossa C, Randi ML. Vitamin K-dependent coagulation factors that may be responsible for both bleeding and thrombosis (FII, FVII, and FIX). Clin Appl Thromb Hemost. 2018;24:42S–7S.

    Article  CAS  Google Scholar 

  22. Herrmann F, Auerswald G, Ruiz-saez A, Navarrete M, Pollmann H, Lopaciuk S, et al. Factor X deficiency: clinical manifestation of 102 subjects from Europe and Latin America with mutations in the factor 10 gene. Haemophilia. 2006;12:479–89.

    Article  CAS  Google Scholar 

  23. Girolami A, Vettore S, Scarparo P, Lombardi AM. Persistent validity of a classification of congenital factor X defects based on clotting, chromogenic and immunological assays even in the molecular biology era. Haemophilia. 2011:17:17–20.

    Article  Google Scholar 

  24. Sun N, Chen Y, Peng H, Luo Y, Zhang G. A novel Ala275Val mutation in factor X gene influences its structural compatibility and impairs intracellular trafficking and coagulant activity. Thromb Res. 2016: 138:108–13.

    Article  CAS  Google Scholar 

  25. Tartary M, Vidaud D, Piao Y, Costa JM, Bahnak BR, Fressinaud E, et al. Detection of a molecular defect in 40 of 44 patients with haemophilia B by PCR and denaturing gradient gel electrophoresis. Br J Haematol. 1993:84:662–69.

    Article  CAS  Google Scholar 

Download references

Acknowledgements

We thank the family for their participation in this research.

Funding

This work was supported in part by the National Natural Science Foundation, PR China (nos. 81970172, 81700182). This research was also supported by Shanxi Provincial Key Research and Development Project (no. 201803D31123) and the Natural Science Foundation of Shanxi Province (201601D202094).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Linhua Yang.

Ethics declarations

Conflict of interest

The authors declare that they have no competing interests, financial or non-financial.

Additional information

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Zhang, X., Chen, K., Wang, G. et al. Molecular mechanism of a novel Ser362Asn mutation causing inherited FX deficiency in a Chinese family. Int J Hematol 112, 8–16 (2020). https://doi.org/10.1007/s12185-020-02877-y

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s12185-020-02877-y

Keywords

Navigation